Name: Gallibacterium anatis F149
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11697

Type strain:

Species: Gallibacterium anatis

Strain Designation: F149

Culture col. no.: DSM 16844, ATCC 43329, CCUG 15563, NCTC 11413, CIP 102679

Strain history: CIP <- 1986, NCTC <- 1981, M. Bisgaard, Copenhagen, Denmark: strain F 149, Taxon 1

NCBI tax ID(s): 1121910 (strain), 750 (species)

SI-ID 46835

ATCC 43329, NCTC 11413, CCUG 15563, CCUG 26456, CIP 102679, DSM 16844

Other strains from Gallibacterium anatis

G. anatis CNPA63, CIP 104143, CCM 5995, CCUG ...
G. anatis CCUG 26455, MCCM 00141

Section

Gallibacterium anatis F149 is a mesophilic, Gram-negative animal pathogen that was isolated from duck.

Gram-negative
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pasteurellales*
	Family	*Pasteurellaceae*
	Genus	*Gallibacterium*
	Species	**Gallibacterium anatis**
	Full Scientific Name (LPSN)	Gallibacterium anatis (Mutters et al. 1985) Christensen et al. 2003

Synonym

Pasteurella anatis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.943

[Ref.: #6629]	Type of hemolysis	gamma
[Ref.: #6629]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6629]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6629]

Culture medium growth

[Ref.: #6629]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6629]

Culture medium composition

expand / minimize

[Ref.: #6629]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #6629]

Culture medium growth

[Ref.: #6629]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6629]

Culture medium composition

expand / minimize

[Ref.: #38103]

Culture medium

MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola

[Ref.: #38103]

Culture medium growth

[Ref.: #38103]

Culture medium composition

expand / minimize

[Ref.: #116375]

Culture medium

CIP Medium 118-b

[Ref.: #116375]

Culture medium growth

[Ref.: #116375]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #6629]			growth	37 °C
[Ref.: #38103]			growth	37 °C

[Ref.: #6629]	Temperature range	mesophilic
[Ref.: #38103]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68377]	urea ChEBI	-	hydrolysis	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #6629]	catalase	+	1.11.1.6
[Ref.: #6629]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #6629]	6090	+	+	-	+	-	-	-	+	+	-	+	-	-
[Ref.: #6629]	6088	+	+	-	+	-	-	-	+	+/-	not determinedn.d.	not determinedn.d.	-	+/-
[Ref.: #6629]	5784	+/-	+	+	-	+	-	-	-	+	+/-	not determinedn.d.	not determinedn.d.	-
[Ref.: #6629]	5783	-	+	+	-	+	-	-	-	+	+	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6629]	Sample type/isolated from	duck
[Ref.: #6629]	Country	Denmark
[Ref.: #6629]	Country ISO 3 Code	DNK
[Ref.: #6629]	Continent	Europe

[Ref.: #116375]	Sample type/isolated from	Animal, Duck, intestine
[Ref.: #116375]	Country	Denmark
[Ref.: #116375]	Country ISO 3 Code	DNK
[Ref.: #116375]	Continent	Europe
[Ref.: #116375]	Isolation date	1981
* marker position based on {}

Isolation sources categories

#Host

#Birds

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6629]	Pathogenicity (animal)	yes
[Ref.: #6629]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116375]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Gallibacterium anatis DSM 16844 = F 149 strain ATCC 43329 16S ribosomal RNA gene, partial sequence	M75054	1478	ENA	1121910 tax ID	*
[Ref.: #20218]	Bisgaard Taxon 3 strain CCUG 15563 16S ribosomal RNA gene, partial sequence	L06079	1488	ENA	28158 tax ID	*
[Ref.: #20218]	Pasteurella anatis strain F149 16S ribosomal RNA gene, partial sequence	AF228001	1471	ENA	1121910 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gallibacterium anatis F149	2514885008	draft	JGI IMG/M	1121910 tax ID	*
[Ref.: #66792]	Gallibacterium anatis DSM 16844 = F 149	GCA_000379785	scaffold	GenBank	1121910 tax ID	*
[Ref.: #66792]	Gallibacterium anatis DSM 16844 = F 149 F149	GCA_000772265	contig	GenBank	1121910 tax ID	*
[Ref.: #66792]	Gallibacterium anatis DSM 16844 = F 149	1121910.3	wgs	PATRIC	1121910 tax ID	*
[Ref.: #66792]	Gallibacterium anatis DSM 16844 = F 149	1121910.4	wgs	PATRIC	1121910 tax ID	*
[Ref.: #66792]	Gallibacterium anatis strain NCTC11413	750.26	wgs	PATRIC	750 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gallibacterium anatis DSM 16844 = F 149 DSM 16844 NCBI: GCA_000379785.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gallibacterium anatis DSM 16844 = F 149 DSM 16844 NCBI: GCA_000379785.1
[Ref.: #69480]	motile	no	87.518	no
[Ref.: #69480]	flagellated	no	96.434	no
[Ref.: #69480]	gram-positive	no	98.098	no
[Ref.: #69480]	anaerobic	no	97.171	no
[Ref.: #69480]	aerobic	no	81.571	no
[Ref.: #69480]	halophile	yes	63.125	no
[Ref.: #69480]	spore-forming	no	98.857	no
[Ref.: #69480]	thermophile	no	99.367	no
[Ref.: #69480]	glucose-util	yes	51.704	no
[Ref.: #69480]	glucose-ferment	yes	51.382	no

Availability in culture collections External links

[Ref.: #6629]

Culture collection no.

DSM 16844, ATCC 43329, CCUG 15563, NCTC 11413, CIP 102679

[Ref.: #80917]

SI-ID 46835

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	A loop-mediated isothermal amplification procedure targeting the sodA gene for rapid and specific identification of Gallibacterium anatis.	Stepien-Pysniak D, Kosikowska U, Hauschild T, Burzynski A, Wilczynski J, Kolinska A, Nowaczek A, Marek A	Poult Sci	10.3382/ps/pex420	2018	*
Phylogeny	Genetic relationships among avian isolates classified as Pasteurella haemolytica, 'Actinobacillus salpingitidis' or Pasteurella anatis with proposal of Gallibacterium anatis gen. nov., comb. nov. and description of additional genomospecies within Gallibacterium gen. nov.	Christensen H, Bisgaard M, Bojesen AM, Mutters R, Olsen JE	Int J Syst Evol Microbiol	10.1099/ijs.0.02330-0	2003	*

References

#6629

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16844

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38103 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80917

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46835.1 )

#116375 Collection of Institut Pasteur ; Curators of the CIP; CIP 102679
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Gallibacterium anatis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Gallibacterium anatis DSM 16844 = F 149 DSM 16844

Gallibacterium anatis DSM 16844 = F 149 DSM 16844

Change proposal

Change proposal