Strain identifier

BacDive ID: 11697

Type strain: Yes

Species: Gallibacterium anatis

Strain Designation: F149

Strain history: CIP <- 1986, NCTC <- 1981, M. Bisgaard, Copenhagen, Denmark: strain F 149, Taxon 1

NCBI tax ID(s): 1121910 (strain), 750 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6629

BacDive-ID: 11697

DSM-Number: 16844

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen

description: Gallibacterium anatis F149 is a mesophilic, Gram-negative animal pathogen that was isolated from duck.

NCBI tax id

NCBI tax idMatching level
750species
1121910strain

strain history

@refhistory
6629<- H. Christensen; F149 <- M. Bisgaard
116375CIP <- 1986, NCTC <- 1981, M. Bisgaard, Copenhagen, Denmark: strain F 149, Taxon 1

doi: 10.13145/bacdive11697.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Gallibacterium
  • species: Gallibacterium anatis
  • full scientific name: Gallibacterium anatis (Mutters et al. 1985) Christensen et al. 2003
  • synonyms

    • @ref: 20215
    • synonym: Pasteurella anatis

@ref: 6629

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Gallibacterium

species: Gallibacterium anatis

full scientific name: Gallibacterium anatis (Mutters et al. 1985) Christensen et al. 2003

strain designation: F149

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.943

colony morphology

  • @ref: 6629
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6629CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
6629COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
38103MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
116375CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
6629positivegrowth37mesophilic
38103positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.998

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis

enzymes

@refvalueactivityec
6629catalase+1.11.1.6
6629cytochrome-c oxidase+1.9.3.1
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
6629++-+---++-+--
6629++-+---++/--+/-
6629+/-++-+---++/--
6629-++-+---++-+-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
6629duckDenmarkDNKEurope
116375Animal, Duck, intestineDenmarkDNKEurope1981

isolation source categories

  • Cat1: #Host
  • Cat2: #Birds

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
6629yes2Risk group (German classification)
1163752Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Gallibacterium anatis DSM 16844 = F 149 strain ATCC 43329 16S ribosomal RNA gene, partial sequenceM750541478ena1121910
20218Bisgaard Taxon 3 strain CCUG 15563 16S ribosomal RNA gene, partial sequenceL060791488ena28158
20218Pasteurella anatis strain F149 16S ribosomal RNA gene, partial sequenceAF2280011471ena1121910

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Gallibacterium anatis NCTC11413GCA_900450735contigncbi750
66792Gallibacterium anatis DSM 16844 = F 149GCA_000379785scaffoldncbi1121910
66792Gallibacterium anatis DSM 16844 = F 149 F149GCA_000772265contigncbi1121910
66792Gallibacterium anatis DSM 16844 = F 1491121910.3wgspatric1121910
66792Gallibacterium anatis DSM 16844 = F 1491121910.4wgspatric1121910
66792Gallibacterium anatis strain NCTC11413750.26wgspatric750
66792Gallibacterium anatis NCTC 114132833159525draftimg750
66792Gallibacterium anatis F1492833090974draftimg1121910
66792Gallibacterium anatis F1492514885008draftimg1121910

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno87.518no
flagellatedno96.434no
gram-positiveno98.098no
anaerobicno97.171no
aerobicno81.571no
halophileyes63.125no
spore-formingno98.857no
thermophileno99.367no
glucose-utilyes51.704no
glucose-fermentyes51.382no

External links

@ref: 6629

culture collection no.: DSM 16844, ATCC 43329, CCUG 15563, NCTC 11413, CIP 102679

straininfo link

  • @ref: 80917
  • straininfo: 46835

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12656185Genetic relationships among avian isolates classified as Pasteurella haemolytica, 'Actinobacillus salpingitidis' or Pasteurella anatis with proposal of Gallibacterium anatis gen. nov., comb. nov. and description of additional genomospecies within Gallibacterium gen. nov.Christensen H, Bisgaard M, Bojesen AM, Mutters R, Olsen JEInt J Syst Evol Microbiol10.1099/ijs.0.02330-02003Actinobacillus/*classification/*genetics/isolation & purification/metabolism, Animals, Base Sequence, Birds/microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Electrophoresis, Gel, Pulsed-Field, Molecular Sequence Data, Pasteurella/*classification/*genetics/isolation & purification/metabolism, Phylogeny, Plasmids/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Terminology as TopicEnzymology
Enzymology29381805A loop-mediated isothermal amplification procedure targeting the sodA gene for rapid and specific identification of Gallibacterium anatis.Stepien-Pysniak D, Kosikowska U, Hauschild T, Burzynski A, Wilczynski J, Kolinska A, Nowaczek A, Marek APoult Sci10.3382/ps/pex4202018Animals, Bacterial Proteins/*isolation & purification, *Chickens, Female, Nucleic Acid Amplification Techniques/methods/*veterinary, Pasteurellaceae/*isolation & purification, Pasteurellaceae Infections/diagnosis/microbiology/*veterinary, Poultry Diseases/*diagnosis/microbiology, Superoxide Dismutase/*isolation & purification, *TurkeysPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6629Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16844)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16844
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38103Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14392
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80917Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46835.1StrainInfo: A central database for resolving microbial strain identifiers
116375Curators of the CIPCollection of Institut Pasteur (CIP 102679)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102679