Strain identifier
BacDive ID: 11697
Type strain:
Species: Gallibacterium anatis
Strain Designation: F149
Strain history: CIP <- 1986, NCTC <- 1981, M. Bisgaard, Copenhagen, Denmark: strain F 149, Taxon 1
NCBI tax ID(s): 1121910 (strain), 750 (species)
General
@ref: 6629
BacDive-ID: 11697
DSM-Number: 16844
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen
description: Gallibacterium anatis F149 is a mesophilic, Gram-negative animal pathogen that was isolated from duck.
NCBI tax id
NCBI tax id | Matching level |
---|---|
750 | species |
1121910 | strain |
strain history
@ref | history |
---|---|
6629 | <- H. Christensen; F149 <- M. Bisgaard |
116375 | CIP <- 1986, NCTC <- 1981, M. Bisgaard, Copenhagen, Denmark: strain F 149, Taxon 1 |
doi: 10.13145/bacdive11697.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Gallibacterium
- species: Gallibacterium anatis
- full scientific name: Gallibacterium anatis (Mutters et al. 1985) Christensen et al. 2003
synonyms
- @ref: 20215
- synonym: Pasteurella anatis
@ref: 6629
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Gallibacterium
species: Gallibacterium anatis
full scientific name: Gallibacterium anatis (Mutters et al. 1985) Christensen et al. 2003
strain designation: F149
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.943
colony morphology
- @ref: 6629
- type of hemolysis: gamma
- incubation period: 1-2 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6629 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
6629 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
38103 | MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola | yes | Distilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g) | |
116375 | CIP Medium 118-b | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6629 | positive | growth | 37 | mesophilic |
38103 | positive | growth | 37 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.998 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68377 | 17634 | D-glucose | + | builds acid from |
68377 | 18257 | ornithine | - | degradation |
68377 | 16199 | urea | - | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
6629 | catalase | + | 1.11.1.6 |
6629 | cytochrome-c oxidase | + | 1.9.3.1 |
68377 | urease | - | 3.5.1.5 |
68377 | ornithine decarboxylase | - | 4.1.1.17 |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6629 | + | + | - | + | - | - | - | + | + | - | + | - | - |
6629 | + | + | - | + | - | - | - | + | +/- | - | +/- | ||
6629 | +/- | + | + | - | + | - | - | - | + | +/- | - | ||
6629 | - | + | + | - | + | - | - | - | + | + | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | isolation date |
---|---|---|---|---|---|
6629 | duck | Denmark | DNK | Europe | |
116375 | Animal, Duck, intestine | Denmark | DNK | Europe | 1981 |
isolation source categories
- Cat1: #Host
- Cat2: #Birds
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
6629 | yes | 2 | Risk group (German classification) |
116375 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Gallibacterium anatis DSM 16844 = F 149 strain ATCC 43329 16S ribosomal RNA gene, partial sequence | M75054 | 1478 | ena | 1121910 |
20218 | Bisgaard Taxon 3 strain CCUG 15563 16S ribosomal RNA gene, partial sequence | L06079 | 1488 | ena | 28158 |
20218 | Pasteurella anatis strain F149 16S ribosomal RNA gene, partial sequence | AF228001 | 1471 | ena | 1121910 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Gallibacterium anatis NCTC11413 | GCA_900450735 | contig | ncbi | 750 |
66792 | Gallibacterium anatis DSM 16844 = F 149 | GCA_000379785 | scaffold | ncbi | 1121910 |
66792 | Gallibacterium anatis DSM 16844 = F 149 F149 | GCA_000772265 | contig | ncbi | 1121910 |
66792 | Gallibacterium anatis DSM 16844 = F 149 | 1121910.3 | wgs | patric | 1121910 |
66792 | Gallibacterium anatis DSM 16844 = F 149 | 1121910.4 | wgs | patric | 1121910 |
66792 | Gallibacterium anatis strain NCTC11413 | 750.26 | wgs | patric | 750 |
66792 | Gallibacterium anatis NCTC 11413 | 2833159525 | draft | img | 750 |
66792 | Gallibacterium anatis F149 | 2833090974 | draft | img | 1121910 |
66792 | Gallibacterium anatis F149 | 2514885008 | draft | img | 1121910 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 87.518 | no |
flagellated | no | 96.434 | no |
gram-positive | no | 98.098 | no |
anaerobic | no | 97.171 | no |
aerobic | no | 81.571 | no |
halophile | yes | 63.125 | no |
spore-forming | no | 98.857 | no |
thermophile | no | 99.367 | no |
glucose-util | yes | 51.704 | no |
glucose-ferment | yes | 51.382 | no |
External links
@ref: 6629
culture collection no.: DSM 16844, ATCC 43329, CCUG 15563, NCTC 11413, CIP 102679
straininfo link
- @ref: 80917
- straininfo: 46835
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 12656185 | Genetic relationships among avian isolates classified as Pasteurella haemolytica, 'Actinobacillus salpingitidis' or Pasteurella anatis with proposal of Gallibacterium anatis gen. nov., comb. nov. and description of additional genomospecies within Gallibacterium gen. nov. | Christensen H, Bisgaard M, Bojesen AM, Mutters R, Olsen JE | Int J Syst Evol Microbiol | 10.1099/ijs.0.02330-0 | 2003 | Actinobacillus/*classification/*genetics/isolation & purification/metabolism, Animals, Base Sequence, Birds/microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Electrophoresis, Gel, Pulsed-Field, Molecular Sequence Data, Pasteurella/*classification/*genetics/isolation & purification/metabolism, Phylogeny, Plasmids/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Terminology as Topic | Enzymology |
Enzymology | 29381805 | A loop-mediated isothermal amplification procedure targeting the sodA gene for rapid and specific identification of Gallibacterium anatis. | Stepien-Pysniak D, Kosikowska U, Hauschild T, Burzynski A, Wilczynski J, Kolinska A, Nowaczek A, Marek A | Poult Sci | 10.3382/ps/pex420 | 2018 | Animals, Bacterial Proteins/*isolation & purification, *Chickens, Female, Nucleic Acid Amplification Techniques/methods/*veterinary, Pasteurellaceae/*isolation & purification, Pasteurellaceae Infections/diagnosis/microbiology/*veterinary, Poultry Diseases/*diagnosis/microbiology, Superoxide Dismutase/*isolation & purification, *Turkeys | Phylogeny |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
6629 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16844) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16844 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
38103 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14392 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68377 | Automatically annotated from API NH | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
80917 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46835.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116375 | Curators of the CIP | Collection of Institut Pasteur (CIP 102679) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102679 |