Avibacterium gallinarum (DSM 17481, ATCC 13361, NCTC 11188)

Name: Avibacterium gallinarum (DSM 17481, ATCC 13361, NCTC 11188)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11692

Type strain

Strain Designation P913

Culture col. no. DSM 17481 ATCC 13361 NCTC 11188 CCUG 12391 CIP 102676 1 more

NCBI tax ID(s) 755

Special Collections DSMZ CCUG CIP

History <- H. Christensen <- NCTC <- P. H. A. Sneath <- K.L. Heddleston, USDA CIP <- 1986, NCTC <- 1975, P.H.A. Sneath, Leicester Univ. <- K.L. Heddleston: strain P913

Links

Avibacterium gallinarum P913 is a microaerophile, mesophilic human pathogen that was isolated from chicken, sinus.

microaerophile mesophilic human pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 35790

ATCC 13361,CCUG 12391,CIP 102676,NCTC 11188,DSM 17481

@ref 20215

Last LPSN update 2026-02-09 11:20:37

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Avibacterium

Species Avibacterium gallinarum

Full scientific name Avibacterium gallinarum (Hall et al. 1955) Blackall et al. 2005

Synonyms (1)

Pasteurella gallinarum

BacDive ID	Other strains from **Avibacterium gallinarum** (24)	Type strain
141369	A. gallinarum CCUG 1208
143307	A. gallinarum CCUG 18362
143312	A. gallinarum CCUG 18394
143313	A. gallinarum CCUG 18395
143315	A. gallinarum CCUG 18398
143316	A. gallinarum CCUG 18399
143317	A. gallinarum CCUG 18400
143318	A. gallinarum CCUG 18401
143319	A. gallinarum CCUG 18402
143320	A. gallinarum CCUG 18403
143321	A. gallinarum CCUG 18404
143322	A. gallinarum CCUG 18405
143323	A. gallinarum CCUG 18406
143324	A. gallinarum CCUG 18407
143364	A. gallinarum CCUG 18733
143505	A. gallinarum CCUG 19610
143506	A. gallinarum CCUG 19611
143507	A. gallinarum CCUG 19612
143508	A. gallinarum CCUG 19613
143509	A. gallinarum CCUG 19614
143510	A. gallinarum CCUG 19615
143511	A. gallinarum CCUG 19616
143512	A. gallinarum CCUG 19617
143513	A. gallinarum CCUG 19618

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.3
125438		95.159
125438	negative	98

Colony morphology

7015

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7015	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7015	HAEMOPHILUS MEDIUM (DSMZ Medium 804)	Medium recipe at MediaDive	Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water
38101	MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola		Distilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
119512	CIP Medium 118-b	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7015	positive	growth	37	mesophilic
38101	positive	growth	37	mesophilic
45685	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
45685	microaerophile
125439	obligate aerobe	97.9

Spore formation

@ref	Spore formation	Confidence
125439		97.3
125438		92.047

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68371	18333 ChEBI	D-arabitol	+	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68381	16988 ChEBI	D-ribose	-	builds acid from	from API rID32STR
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68381	17716 ChEBI	lactose	-	builds acid from	from API rID32STR
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68381	16634 ChEBI	raffinose	+	builds acid from	from API rID32STR
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68381	17992 ChEBI	sucrose	+	builds acid from	from API rID32STR
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68381	15688 ChEBI	acetoin	-	from API rID32STR

Enzymes

@ref	Value	Activity	Ec
68381	Alanyl-Phenylalanyl-Proline arylamidase	-		from API rID32STR
68381	alkaline phosphatase	+	3.1.3.1	from API rID32STR
68381	alpha-galactosidase	-	3.2.1.22	from API rID32STR
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68381	beta-glucosidase	-	3.2.1.21	from API rID32STR
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
68381	glycyl tryptophan arylamidase	-		from API rID32STR
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68381	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32STR
68381	urease	-	3.5.1.5	from API rID32STR

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
7015	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
7015	-	-	-	-	-	+	-	-	-	-	+	+	+	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Inflammation	-
#Host	#Birds	#Chicken

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7015	chicken, sinus	USA	USA	North America
45685	Chicken sinus
119512	Animal, Chicken, sinus	United States of America	USA	North America

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
7015			2	Risk group (German classification) According to TRBA 466
119512			2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	49642_F01 assembly for Avibacterium gallinarum NCTC11188	contig	GCA_900454485	755.6	2840382936	755	74.49
66792	ASM436253v1 assembly for Avibacterium gallinarum DSM 17481	scaffold	GCA_004362535	755.7	2799112277	755	72.21
66792	ASM292113v1 assembly for Avibacterium gallinarum NCTC 11188	contig	GCA_002921135	755.5	2842988149	755	65.46

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Avibacterium gallinarum strain NCTC 11188 16S ribosomal RNA gene, partial sequence	AY362921	1363		755
7015	Avibacterium gallinarum strain NCTC 11188 16S ribosomal RNA gene, partial sequence	M75059	1480		755

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Avibacterium gallinarum DSM 17481
NCBI: GCA_004362535

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.30	no
125439	motility	BacteriaNetⓘ	no	73.30	no
125439	gram_stain	BacteriaNetⓘ	negative	97.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Avibacterium gallinarum DSM 17481
NCBI: GCA_004362535.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	94.22	no
125438	aerobic	aerobicⓘ	no	84.80	yes
125438	spore-forming	spore-formingⓘ	no	92.05	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	no	95.16	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	A Highly Sensitive and Specific Probe-Based Real-Time PCR for the Detection of Avibacterium paragallinarum in Clinical Samples From Poultry.	Kuchipudi SV, Yon M, Surendran Nair M, Byukusenge M, Barry RM, Nissly RH, Williams J, Pierre T, Mathews T, Walner-Pendleton E, Dunn P, Barnhart D, Loughrey S, Davison S, Kelly DJ, Tewari D, Jayarao BM.	Front Vet Sci	10.3389/fvets.2021.609126	2021
Phylogeny	Experimental reproduction of endocarditis with Pasteurella gallinarum in mature leghorn chickens.	Tjahjowati G, Orr JP, Chirino-Trejo M, Mills JH	Avian Dis		1995
Pathogenicity	Proposal of a Method for Harmonized Broth Microdilution Antimicrobial Susceptibility Testing of Avibacterium gallinarum.	Gutgemann F, Muller A, Churin Y, Jung A, Kumm F, Heuvelink A, Yue M, Kehrenberg C	J Clin Microbiol	10.1128/jcm.00419-22	2022

References

#7015	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17481
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38101	; Curators of the CIP;
#45685	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12391
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#68381	Automatically annotated from API rID32STR .
#119512	Collection of Institut Pasteur ; Curators of the CIP; CIP 102676
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Avibacterium gallinarum (DSM 17481, ATCC 13361, NCTC 11188)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 50CHac

API rID32STR

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900454485

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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