Strain identifier

BacDive ID: 11692

Type strain: Yes

Species: Avibacterium gallinarum

Strain Designation: P913

Strain history: CIP <- 1986, NCTC <- 1975, P.H.A. Sneath, Leicester Univ. <- K.L. Heddleston: strain P913

NCBI tax ID(s): 755 (species)

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General

@ref: 7015

BacDive-ID: 11692

DSM-Number: 17481

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen

description: Avibacterium gallinarum P913 is a microaerophile, mesophilic human pathogen that was isolated from chicken, sinus.

NCBI tax id

  • NCBI tax id: 755
  • Matching level: species

strain history

@refhistory
7015<- H. Christensen <- NCTC <- P. H. A. Sneath <- K.L. Heddleston, USDA
119512CIP <- 1986, NCTC <- 1975, P.H.A. Sneath, Leicester Univ. <- K.L. Heddleston: strain P913

doi: 10.13145/bacdive11692.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Avibacterium
  • species: Avibacterium gallinarum
  • full scientific name: Avibacterium gallinarum (Hall et al. 1955) Blackall et al. 2005

  • synonyms

    • @ref: 20215
    • synonym: Pasteurella gallinarum

@ref: 7015

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Avibacterium

species: Avibacterium gallinarum

full scientific name: Avibacterium gallinarum (Hall et al. 1955) Blackall et al. 2005

strain designation: P913

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotility
125439negative97.3
12543895.159no
125438negative98

colony morphology

  • @ref: 7015
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7015COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7015HAEMOPHILUS MEDIUM (DSMZ Medium 804)yeshttps://mediadive.dsmz.de/medium/804Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water
38101MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
119512CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperature
7015positivegrowth37
38101positivegrowth37
45685positivegrowth37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
45685microaerophile
125439obligate aerobe97.9

spore formation

@refspore formationconfidence
125439no97.3
125438no92.047

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116443D-tagatose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
683816731melezitose-builds acid from
6838128053melibiose-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128087glycogen-builds acid from
68381606565hippurate-hydrolysis
6838140585alpha-cyclodextrin-builds acid from
6838118333D-arabitol-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838116634raffinose+builds acid from
6838117716lactose-builds acid from
6838130911sorbitol-builds acid from
6838116899D-mannitol-builds acid from
68371Potassium 5-ketogluconate-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6838116199urea-hydrolysis
6838127082trehalose+builds acid from
6838116988D-ribose-builds acid from
6838129016arginine-hydrolysis
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol+builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381beta-glucuronidase-3.2.1.31
68381alpha-galactosidase-3.2.1.22
68381arginine dihydrolase-3.5.3.6
68381alkaline phosphatase+3.1.3.1
68381beta-glucosidase-3.2.1.21

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
7015----------++++--------+-----+--++------------+----

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
7015-----+----+++------+-----+------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7015chicken, sinusUSAUSANorth America
45685Chicken sinus
119512Animal, Chicken, sinusUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Host#Birds#Chicken

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
7015yesyes2Risk group (German classification)
1195122Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Avibacterium gallinarum strain NCTC 11188 16S ribosomal RNA gene, partial sequenceAY3629211363nuccore755
7015Avibacterium gallinarum strain NCTC 11188 16S ribosomal RNA gene, partial sequenceM750591480nuccore755

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Avibacterium gallinarum DSM 17481GCA_004362535scaffoldncbi755
66792Avibacterium gallinarum NCTC11188GCA_900454485contigncbi755
66792Avibacterium gallinarum NCTC 11188GCA_002921135contigncbi755
66792Avibacterium gallinarum strain DSM 17481755.7wgspatric755
66792Avibacterium gallinarum strain NCTC 11188755.5wgspatric755
66792Avibacterium gallinarum strain NCTC11188755.6wgspatric755
66792Avibacterium gallinarum NCTC 111882842988149draftimg755
66792Avibacterium gallinarum NCTC 111882840382936draftimg755
66792Avibacterium gallinarum DSM 174812799112277draftimg755

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno98no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.215no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no84.798yes
125438spore-formingspore-formingAbility to form endo- or exosporesno92.047no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96yes
125438motile2+flagellatedAbility to perform flagellated movementno95.159no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno97.3
125439BacteriaNetmotilityAbility to perform movementno73.3
125439BacteriaNetgram_stainReaction to gram-stainingnegative97.3
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe97.9

External links

@ref: 7015

culture collection no.: DSM 17481, ATCC 13361, NCTC 11188, CCUG 12391, CIP 102676

straininfo link

  • @ref: 80912
  • straininfo: 35790

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Phylogeny8561732Experimental reproduction of endocarditis with Pasteurella gallinarum in mature leghorn chickens.Tjahjowati G, Orr JP, Chirino-Trejo M, Mills JHAvian Dis1995Animals, Chickens, Endocarditis, Bacterial/microbiology/pathology/*veterinary, Pasteurella/classification/isolation & purification, Pasteurella Infections/microbiology/pathology/*veterinary, Phenotype, Poultry Diseases/*microbiology/pathologyPhenotype
Pathogenicity35852371Proposal of a Method for Harmonized Broth Microdilution Antimicrobial Susceptibility Testing of Avibacterium gallinarum.Gutgemann F, Muller A, Churin Y, Jung A, Kumm F, Heuvelink A, Yue M, Kehrenberg CJ Clin Microbiol2022*Anti-Bacterial Agents/pharmacology, *Anti-Infective Agents, Humans, Microbial Sensitivity Tests, Pasteurellaceae, Reproducibility of Results10.1128/jcm.00419-22

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7015Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17481)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17481
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38101Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14388
45685Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 12391)https://www.ccug.se/strain?id=12391
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
80912Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID35790.1StrainInfo: A central database for resolving microbial strain identifiers
119512Curators of the CIPCollection of Institut Pasteur (CIP 102676)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102676
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1