Strain identifier

BacDive ID: 11692

Type strain: Yes

Species: Avibacterium gallinarum

Strain Designation: P913

Strain history: CIP <- 1986, NCTC <- 1975, P.H.A. Sneath, Leicester Univ. <- K.L. Heddleston: strain P913

NCBI tax ID(s): 755 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7015

BacDive-ID: 11692

DSM-Number: 17481

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, human pathogen

description: Avibacterium gallinarum P913 is a microaerophile, mesophilic, Gram-negative human pathogen that was isolated from chicken, sinus.

NCBI tax id

  • NCBI tax id: 755
  • Matching level: species

strain history

@refhistory
7015<- H. Christensen <- NCTC <- P. H. A. Sneath <- K.L. Heddleston, USDA
119512CIP <- 1986, NCTC <- 1975, P.H.A. Sneath, Leicester Univ. <- K.L. Heddleston: strain P913

doi: 10.13145/bacdive11692.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Avibacterium
  • species: Avibacterium gallinarum
  • full scientific name: Avibacterium gallinarum (Hall et al. 1955) Blackall et al. 2005
  • synonyms

    • @ref: 20215
    • synonym: Pasteurella gallinarum

@ref: 7015

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Avibacterium

species: Avibacterium gallinarum

full scientific name: Avibacterium gallinarum (Hall et al. 1955) Blackall et al. 2005

strain designation: P913

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.935

colony morphology

  • @ref: 7015
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7015COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7015HAEMOPHILUS MEDIUM (DSMZ Medium 804)yeshttps://mediadive.dsmz.de/medium/804Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water
38101MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
119512CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
7015positivegrowth37mesophilic
38101positivegrowth37mesophilic
45685positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 45685
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68381arginine-hydrolysis29016
68381D-ribose-builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381lactose-builds acid from17716
68381trehalose+builds acid from27082
68381raffinose+builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan-builds acid from27941
68381maltose+builds acid from17306
68381melibiose-builds acid from28053
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside-builds acid from320055
68381D-tagatose-builds acid from16443
68381urea-hydrolysis16199

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
7015----------++++--------+-----+--++------------+----

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
7015-----+----+++------+-----+------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7015chicken, sinusUSAUSANorth America
45685Chicken sinus
119512Animal, Chicken, sinusUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Host#Birds#Chicken

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
7015yesyes2Risk group (German classification)
1195122Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pasteurella gallinarum strain NCTC 11188 16S ribosomal RNA gene, partial sequenceAY3629211363ena755
7015Avibacterium gallinarum strain NCTC 11188 16S ribosomal RNA gene, partial sequenceM750591480ena755

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Avibacterium gallinarum DSM 17481GCA_004362535scaffoldncbi755
66792Avibacterium gallinarum NCTC11188GCA_900454485contigncbi755
66792Avibacterium gallinarum NCTC 11188GCA_002921135contigncbi755
66792Avibacterium gallinarum strain DSM 17481755.7wgspatric755
66792Avibacterium gallinarum strain NCTC 11188755.5wgspatric755
66792Avibacterium gallinarum strain NCTC11188755.6wgspatric755
66792Avibacterium gallinarum NCTC 111882842988149draftimg755
66792Avibacterium gallinarum NCTC 111882840382936draftimg755
66792Avibacterium gallinarum DSM 174812799112277draftimg755

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno87.978no
flagellatedno94.574no
gram-positiveno98.489no
anaerobicno97.754no
aerobicno93.746yes
halophileyes56.232no
spore-formingno98.811no
glucose-utilno55.298no
thermophileno98.043yes
glucose-fermentyes58.266no

External links

@ref: 7015

culture collection no.: DSM 17481, ATCC 13361, NCTC 11188, CCUG 12391, CIP 102676

straininfo link

  • @ref: 80912
  • straininfo: 35790

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Phylogeny8561732Experimental reproduction of endocarditis with Pasteurella gallinarum in mature leghorn chickens.Tjahjowati G, Orr JP, Chirino-Trejo M, Mills JHAvian Dis1995Animals, Chickens, Endocarditis, Bacterial/microbiology/pathology/*veterinary, Pasteurella/classification/isolation & purification, Pasteurella Infections/microbiology/pathology/*veterinary, Phenotype, Poultry Diseases/*microbiology/pathologyPhenotype
Pathogenicity35852371Proposal of a Method for Harmonized Broth Microdilution Antimicrobial Susceptibility Testing of Avibacterium gallinarum.Gutgemann F, Muller A, Churin Y, Jung A, Kumm F, Heuvelink A, Yue M, Kehrenberg CJ Clin Microbiol2022*Anti-Bacterial Agents/pharmacology, *Anti-Infective Agents, Humans, Microbial Sensitivity Tests, Pasteurellaceae, Reproducibility of Results10.1128/jcm.00419-22

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7015Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17481)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17481
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38101Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14388
45685Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 12391)https://www.ccug.se/strain?id=12391
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80912Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID35790.1StrainInfo: A central database for resolving microbial strain identifiers
119512Curators of the CIPCollection of Institut Pasteur (CIP 102676)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102676