Cite this strain

"Paenibacillus xylaniclasticus" (DSM 26531, KCTC 13719, NBRC 106381)

BacDive ID 11665

Type strain

Strain Designation TW1

Culture col. no. DSM 26531 KCTC 13719 NBRC 106381 TISTR 1914 TW1

NCBI tax ID(s) 588083

Special Collections DSMZ KCTC

History <- NBRC; NBRC 106381

Links

"Paenibacillus xylaniclasticus" TW1 is a bacterium that was isolated from sludge in an anaerobic digester fed with pineapple waste.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407239

KCTC 13719,NBRC 106381,DSM 26531

@ref 20215

Last LPSN update 2026-02-09 11:20:37

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species "Paenibacillus xylaniclasticus"

Full scientific name Paenibacillus xylaniclasticus Tachaapaikoon et al. 2012

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18253	GLUCOSE MINERAL SALTS MEDIUM (DSMZ Medium 1458)		Medium recipe at MediaDive	Name: Glucose minerals salts medium (DSMZ Medium 1458) Composition: Agar 15.0 g/l Glucose 5.0 g/l NaNO3 2.0 g/l K2HPO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 7 H2O 0.02 g/l FeSO4 x 7 H2O 0.02 g/l MnSO4 x 5 H2O 0.02 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18253	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		92.104

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Anaerobic digestor
#Engineered	#Waste	-
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
18253	sludge in an anaerobic digester fed with pineapple waste	Thailand	THA	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM400106v1 assembly for Paenibacillus xylaniclasticus NBRC 106381	contig	GCA_004001065	588083.3	2988232028	588083	54.74

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18253	Paenibacillus xylaniclasticus strain TW1 16S ribosomal RNA gene, partial sequence	FJ532373	1513		588083

GC content

18253

GC-content (mol%)49.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus xylaniclasticus NBRC 106381
NCBI: GCA_004001065

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	87.50	no
125439	motility	BacteriaNetⓘ	yes	84.20	no
125439	gram_stain	BacteriaNetⓘ	positive	64.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	86.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus xylaniclasticus strain NBRC 106381
PATRIC: 588083.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	67.24	no
125438	anaerobic	anaerobicⓘ	no	97.71	no
125438	spore-forming	spore-formingⓘ	yes	92.10	no
125438	aerobic	aerobicⓘ	yes	67.05	no
125438	thermophilic	thermophileⓘ	no	83.36	yes
125438	flagellated	motile2+ⓘ	yes	84.82	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Non-Catalytic Domains of Glycoside Hydrolase Family 5 from Paenibacillus curdlanolyticus are Important for Promoting Multifunctional Enzyme Activities and Degradation of Agricultural Residues.	Fatmawati NV, Singkhala A, Ketbot P, Baramee S, Waeonukul R, Tachaapaikoon C, Uke A, Kosugi A, Ratanakhanokchai K, Pason P.	J Microbiol Biotechnol	10.4014/jmb.2501.01046	2025
Phylogeny	Paenibacillus ginsengiterrae sp. nov., a ginsenoside-hydrolyzing bacteria isolated from soil of ginseng field.	Huq MA, Kim YJ, Hoang VA, Siddiqi MZ, Yang DC	Arch Microbiol	10.1007/s00203-014-1073-0	2014
Phylogeny	Paenibacillus xylaniclasticus sp. nov., a xylanolytic-cellulolytic bacterium isolated from sludge in an anaerobic digester.	Tachaapaikoon C, Tanasupawat S, Pason P, Sornyotha S, Waeonukul R, Kyu KL, Ratanakhanokchai K	J Microbiol	10.1007/s12275-012-1480-3	2012

References

#18253	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26531
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Paenibacillus xylaniclasticus" (DSM 26531, KCTC 13719, NBRC 106381)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004001065

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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