Name: Paenibacillus xylaniclasticus TW1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11665

Type strain:

Species: Paenibacillus xylaniclasticus

Strain Designation: TW1

Culture col. no.: DSM 26531, KCTC 13719, NBRC 106381, TISTR 1914

Strain history: <- NBRC; NBRC 106381

NCBI tax ID(s): 588083 (species)

Special Collections

DSMZ
KCTC

Section

Paenibacillus xylaniclasticus TW1 is a spore-forming bacterium that was isolated from sludge in an anaerobic digester fed with pineapple waste.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	"Paenibacillus xylaniclasticus"
	Full Scientific Name (LPSN)	Paenibacillus xylaniclasticus Tachaapaikoon et al. 2012

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18253]

Culture medium

GLUCOSE MINERAL SALTS MEDIUM (DSMZ Medium 1458)

[Ref.: #18253]

Culture medium growth

[Ref.: #18253]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18253]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18253]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.104
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18253]	Sample type/isolated from	sludge in an anaerobic digester fed with pineapple waste
[Ref.: #18253]	Country	Thailand
[Ref.: #18253]	Country ISO 3 Code	THA
[Ref.: #18253]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Anaerobic digestor
#Engineered	#Waste	-
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18253]	Paenibacillus xylaniclasticus strain TW1 16S ribosomal RNA gene, partial sequence	FJ532373	1513	GenBank ENA	588083 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus xylaniclasticus NBRC 106381	GCA_004001065	contig	GenBank ENA	588083 tax ID	*
[Ref.: #66792]	Paenibacillus xylaniclasticus strain NBRC 106381	588083.3	wgs	PATRIC	588083 tax ID	*

[Ref.: #18253]

GC-content

49.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus xylaniclasticus strain NBRC 106381 PATRIC: 588083.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus xylaniclasticus strain NBRC 106381 PATRIC: 588083.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	67.237	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.713	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.104	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	67.049	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	83.36	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.816	no

Availability in culture collections External links

[Ref.: #18253]

Culture collection no.

DSM 26531, KCTC 13719, NBRC 106381, TISTR 1914

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus ginsengiterrae sp. nov., a ginsenoside-hydrolyzing bacteria isolated from soil of ginseng field.	Huq MA, Kim YJ, Hoang VA, Siddiqi MZ, Yang DC	Arch Microbiol	10.1007/s00203-014-1073-0	2014	*
Phylogeny	Paenibacillus xylaniclasticus sp. nov., a xylanolytic-cellulolytic bacterium isolated from sludge in an anaerobic digester.	Tachaapaikoon C, Tanasupawat S, Pason P, Sornyotha S, Waeonukul R, Kyu KL, Ratanakhanokchai K	J Microbiol	10.1007/s12275-012-1480-3	2012	*

References

#18253

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26531

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Paenibacillus xylaniclasticus strain NBRC 106381

Paenibacillus xylaniclasticus strain NBRC 106381

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