Name: Paenibacillus forsythiae T 98
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11628

Type strain:

Species: Paenibacillus forsythiae

Strain Designation: T 98, T98

Culture col. no.: DSM 17842, CCBAU 10203, CIP 110608

Strain history: CIP <- 2013, DSMZ <- Y. Ma, Beijing, China: strain T98

NCBI tax ID(s): 365616 (species)

SI-ID 408366

DSM 17842, CIP 110608

Section

Paenibacillus forsythiae T 98 is a facultative aerobe, spore-forming, mesophilic bacterium that was isolated from plant rhizosphere, Forsythia mira.

Gram-positive
motile
rod-shaped
spore-forming
facultative aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus forsythiae**
	Full Scientific Name (LPSN)	Paenibacillus forsythiae Ma and Chen 2008

Information on morphological and physiological properties Morphology

[Ref.: #32273]	Gram stain	positive
[Ref.: #119432]	Gram stain	positive

[Ref.: #32273]	Cell length	2.3 µm

[Ref.: #32273]	Cell width	0.45 µm

[Ref.: #32273]	Cell shape	rod-shaped
[Ref.: #119432]	Cell shape	rod-shaped

[Ref.: #32273]	Motility	yes
[Ref.: #119432]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7137]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #7137]

Culture medium growth

[Ref.: #7137]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7137]

Culture medium composition

expand / minimize

[Ref.: #119432]

Culture medium

CIP Medium 29

[Ref.: #119432]

Culture medium growth

[Ref.: #119432]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7137]	growth	30 °C
[Ref.: #32273]	growth	10-40 °C
[Ref.: #32273]	optimum	30 °C

[Ref.: #7137]	Temperature range	mesophilic
[Ref.: #32273]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32273]			optimum	7.1
[Ref.: #32273]			growth	04-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32273]

Oxygen tolerance

facultative aerobe

[Ref.: #32273]	Ability of spore formation	yes
[Ref.: #119432]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32273]		NaCl		growth	0-3	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32273]		nitrate ChEBI	+	reduction
[Ref.: #32273]		succinate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32273]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7137]	Sample type/isolated from	plant rhizosphere, Forsythia mira
[Ref.: #7137]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #7137]	Country	China
[Ref.: #7137]	Country ISO 3 Code	CHN
[Ref.: #7137]	Continent	Asia

[Ref.: #119432]	Sample type/isolated from	Environment, Rhizosphere soil, Forsythia mira
[Ref.: #119432]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #119432]	Country	China
[Ref.: #119432]	Country ISO 3 Code	CHN
[Ref.: #119432]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ338443 (>99% sequence identity) for Paenibacillus forsythiae from Microbeatlas

Aquatic Samples	2
Soil Samples	5
Animal Samples
Plant Samples	3
Total Samples	10

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7137]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119432]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7137]	Paenibacillus forsythiae strain T98 16S ribosomal RNA gene, partial sequence	DQ338443	1519	ENA	365616 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus forsythiae DSM 17842	2926669167	draft	JGI IMG/M	365616 tax ID	*

[Ref.: #7137]

GC-content

50.4 mol%

Availability in culture collections External links

[Ref.: #7137]

Culture collection no.

DSM 17842, CCBAU 10203, CIP 110608

[Ref.: #80853]

SI-ID 408366

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus brassicae sp. nov., isolated from cabbage rhizosphere in Beijing, China.	Gao M, Yang H, Zhao J, Liu J, Sun YH, Wang YJ, Sun JG	Antonie Van Leeuwenhoek	10.1007/s10482-012-9849-1	2012	*
Phylogeny	Paenibacillus sophorae sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Sophora japonica.	Jin HJ, Lv J, Chen SF	Int J Syst Evol Microbiol	10.1099/ijs.0.021709-0	2010	*
Phylogeny	Paenibacillus forsythiae sp. nov., a nitrogen-fixing species isolated from rhizosphere soil of Forsythia mira.	Ma YC, Chen SF	Int J Syst Evol Microbiol	10.1099/ijs.0.65238-0	2008	*

References

#7137

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17842

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32273

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28513 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80853

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408366.1 )

#119432 Collection of Institut Pasteur ; Curators of the CIP; CIP 110608

#28513

IJSEM 319 2008 ( DOI 10.1099/ijs.0.65238-0 , PubMed 18218925 )

* These data were automatically processed and therefore are not curated

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