Paenibacillus forsythiae (DSM 17842, CCBAU 10203, CIP 110608)

Name: Paenibacillus forsythiae (DSM 17842, CCBAU 10203, CIP 110608)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11628

Type strain

Strain Designation T 98, T98

Culture col. no. DSM 17842 CCBAU 10203 CIP 110608 T 98 T98

NCBI tax ID(s) 365616

Special Collections DSMZ CIP Literature strains

History DSMZ <- Yuchao Ma; strainT98 CIP <- 2013, DSMZ <- Y. Ma, Beijing, China: strain T98

Links

Paenibacillus forsythiae T 98 is a facultative aerobe, spore-forming, Gram-positive bacterium that was isolated from plant rhizosphere, Forsythia mira.

spore-forming Gram-positive motile rod-shaped facultative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 408366

DSM 17842,CIP 110608

@ref 20215

Last LPSN update 2026-05-29 08:27:36

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus forsythiae

Full scientific name Paenibacillus forsythiae Ma and Chen 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32273	positive	2.3 µm	0.45 µm	rod-shaped
119432	positive			rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7137	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
119432	CIP Medium 29		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7137	positive	growth	30
32273	positive	growth	10-40
32273	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
32273	positive	optimum	7.1
32273	positive	growth	04-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32273	facultative aerobe
125439	facultative anaerobe	94.877

Spore formation

@ref	Spore formation	Confidence
32273
125439		91.458
119432

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32273	NaCl	positive	growth	0-3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32273	17632 ChEBI	nitrate	+	reduction
32273	30031 ChEBI	succinate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32273	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7137	plant rhizosphere, Forsythia mira	Beijing	China	CHN	Asia
119432	Environment, Rhizosphere soil, Forsythia mira	Beijing	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ338443 (>99% sequence identity) for Paenibacillus forsythiae from Microbeatlas

Aquatic Samples	2
Soil Samples	5
Animal Samples	0
Plant Samples	3
Total Samples	10

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7137	1	Risk group (German classification) According to TRBA 466
119432	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM3195438v1 assembly for Paenibacillus forsythiae T98	contig	GCA_031954385	365616.4	2926669167	365616	63.86

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7137	Paenibacillus forsythiae strain T98 16S ribosomal RNA gene, partial sequence	DQ338443	1519		365616

GC content

7137

GC-content (mol%)50.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3195438v1 assembly for Paenibacillus forsythiae T98
NCBI: GCA_031954385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	variable	74.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.88	no
125439	motility	BacteriaNetⓘ	yes	86.67	no
125439	spore_formation	BacteriaNetⓘ	yes	91.46	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus brassicae sp. nov., isolated from cabbage rhizosphere in Beijing, China.	Gao M, Yang H, Zhao J, Liu J, Sun YH, Wang YJ, Sun JG	Antonie Van Leeuwenhoek	10.1007/s10482-012-9849-1	2012
Phylogeny	Paenibacillus sophorae sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Sophora japonica.	Jin HJ, Lv J, Chen SF	Int J Syst Evol Microbiol	10.1099/ijs.0.021709-0	2010
Phylogeny	Paenibacillus forsythiae sp. nov., a nitrogen-fixing species isolated from rhizosphere soil of Forsythia mira.	Ma YC, Chen SF	Int J Syst Evol Microbiol	10.1099/ijs.0.65238-0	2008

References

#7137	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17842
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28513	IJSEM 319 2008 ( DOI 10.1099/ijs.0.65238-0 , PubMed 18218925 )
#32273	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28513
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119432	Collection of Institut Pasteur ; Curators of the CIP; CIP 110608
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus forsythiae (DSM 17842, CCBAU 10203, CIP 110608)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_031954385

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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