Strain identifier

BacDive ID: 11628

Type strain: Yes

Species: Paenibacillus forsythiae

Strain Designation: T 98, T98

Strain history: CIP <- 2013, DSMZ <- Y. Ma, Beijing, China: strain T98

NCBI tax ID(s): 365616 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.2 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.2 (current version)

General

@ref: 7137

BacDive-ID: 11628

DSM-Number: 17842

keywords: genome sequence, 16S sequence, Bacteria, facultative aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Paenibacillus forsythiae T 98 is a facultative aerobe, spore-forming, mesophilic bacterium that was isolated from plant rhizosphere, Forsythia mira.

NCBI tax id

  • NCBI tax id: 365616
  • Matching level: species

strain history

@refhistory
7137<- Yuchao Ma; strainT98
119432CIP <- 2013, DSMZ <- Y. Ma, Beijing, China: strain T98

doi: 10.13145/bacdive11628.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus forsythiae
  • full scientific name: Paenibacillus forsythiae Ma and Chen 2008

@ref: 7137

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus forsythiae

full scientific name: Paenibacillus forsythiae Ma and Chen 2008

strain designation: T 98, T98

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32273positive2.3 µm0.45 µmrod-shapedyes
119432positiverod-shapedyes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7137CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
119432CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperature
7137positivegrowth30
32273positivegrowth10-40
32273positiveoptimum30

culture pH

@refabilitytypepHPH range
32273positivegrowth04-10alkaliphile
32273positiveoptimum7.1

Physiology and metabolism

oxygen tolerance

  • @ref: 32273
  • oxygen tolerance: facultative aerobe

spore formation

@refspore formation
32273yes
119432yes

halophily

  • @ref: 32273
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-3 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3227330031succinate+carbon source
3227317632nitrate+reduction

enzymes

  • @ref: 32273
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7137plant rhizosphere, Forsythia miraBeijingChinaCHNAsia
119432Environment, Rhizosphere soil, Forsythia miraBeijingChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_131869.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_863;97_1009;98_2564;99_131869&stattab=map
  • Last taxonomy: Paenibacillus forsythiae
  • 16S sequence: DQ338443
  • Sequence Identity:
  • Total samples: 10
  • soil counts: 5
  • aquatic counts: 2
  • plant counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
71371Risk group (German classification)
1194321Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7137
  • description: Paenibacillus forsythiae strain T98 16S ribosomal RNA gene, partial sequence
  • accession: DQ338443
  • length: 1519
  • database: nuccore
  • NCBI tax ID: 365616

Genome sequences

  • @ref: 66792
  • description: Paenibacillus forsythiae DSM 17842
  • accession: 2926669167
  • assembly level: draft
  • database: img
  • NCBI tax ID: 365616

GC content

  • @ref: 7137
  • GC-content: 50.4

External links

@ref: 7137

culture collection no.: DSM 17842, CCBAU 10203, CIP 110608

straininfo link

  • @ref: 80853
  • straininfo: 408366

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18218925Paenibacillus forsythiae sp. nov., a nitrogen-fixing species isolated from rhizosphere soil of Forsythia mira.Ma YC, Chen SFInt J Syst Evol Microbiol10.1099/ijs.0.65238-02008Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, Fatty Acids/analysis, Forsythia/*microbiology, Genes, rRNA, Gram-Positive Endospore-Forming Rods/chemistry/*classification/genetics/isolation & purification, Molecular Sequence Data, *Nitrogen Fixation, Nucleic Acid Hybridization, Phenotype, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species SpecificityGenetics
Phylogeny20435753Paenibacillus sophorae sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Sophora japonica.Jin HJ, Lv J, Chen SFInt J Syst Evol Microbiol10.1099/ijs.0.021709-02010Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Nitrogen Fixation, Nucleic Acid Hybridization, Oxidoreductases/genetics, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Sophora/*microbiologyGenetics
Phylogeny23180372Paenibacillus brassicae sp. nov., isolated from cabbage rhizosphere in Beijing, China.Gao M, Yang H, Zhao J, Liu J, Sun YH, Wang YJ, Sun JGAntonie Van Leeuwenhoek10.1007/s10482-012-9849-12012Bacterial Typing Techniques, Brassica/*microbiology, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Spores, Bacterial/cytology, Temperature, Vitamin K 2/analysisGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7137Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17842)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17842
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32273Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2851328776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80853Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID408366.1StrainInfo: A central database for resolving microbial strain identifiers
119432Curators of the CIPCollection of Institut Pasteur (CIP 110608)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110608