Name: Paenibacillus taiwanensis G-soil-2-3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11604

Type strain:

Species: Paenibacillus taiwanensis

Strain Designation: G-soil-2-3

Culture col. no.: DSM 18679, IAM 15414, LMG 23799, BCRC 17411, JCM 23198, CIP 109674, KCTC 13628

Strain history: CIP <- 2007, JCM <- 2007, IAM <- C.C Lo, Counc. Agric., Taichung, Taiwan: strain G-soil-2-3

NCBI tax ID(s): 1122926 (strain), 401638 (species)

SI-ID 292881

LMG 23799, BCRC 17411, CCRC 17411, IAM 15414, DSM 18679, JCM 23198, CIP 109674

Special Collections

Section

When using BacDive for research please cite our paper

Paenibacillus taiwanensis G-soil-2-3 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from farmland soil.

Gram-variable
motile
rod-shaped
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus taiwanensis**
	Full Scientific Name (LPSN)	Paenibacillus taiwanensis Lee et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31986]	Gram stain	variable
[Ref.: #123423]	Gram stain	positive

[Ref.: #31986]	Cell length	2.5-6.8 µm

[Ref.: #31986]	Cell width	0.7-0.9 µm

[Ref.: #31986]	Cell shape	rod-shaped
[Ref.: #123423]	Cell shape	rod-shaped

[Ref.: #31986]	Motility	yes
[Ref.: #123423]	Motility	yes

[Ref.: #31986]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7656]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #7656]

Culture medium growth

[Ref.: #7656]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7656]

Culture medium composition

expand / minimize

[Ref.: #33318]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33318]

Culture medium growth

[Ref.: #33318]

Culture medium composition

expand / minimize

[Ref.: #123423]

Culture medium

CIP Medium 72

[Ref.: #123423]

Culture medium growth

[Ref.: #123423]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7656]	growth	30 °C
[Ref.: #31986]	growth	10-45 °C
[Ref.: #31986]	optimum	30 °C
[Ref.: #33318]	growth	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31986]			optimum	07-08
[Ref.: #31986]			growth	4.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31986]	Oxygen tolerance	facultative anaerobe
[Ref.: #123423]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %94.5

[Ref.: #31986]	Ability of spore formation	yes
[Ref.: #125438]	Ability of spore formation	yes Confidence in %93.802
[Ref.: #125439]	Ability of spore formation	yes Confidence in %93.4

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31986]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31986]	gluconate ChEBI	+	carbon source
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31986]	glucosamine ChEBI	+	carbon source
[Ref.: #31986]	glucose ChEBI	+	carbon source
[Ref.: #31986]	glycerol ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31986]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31986]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #123423]	nitrate ChEBI	+	reduction
[Ref.: #123423]	nitrite ChEBI	+	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31986]	ribose ChEBI	+	carbon source
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31986]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31986]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123423]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31986]	catalase	+	1.11.1.6
[Ref.: #123423]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123423]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123423]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123423]	11629	not determinedn.d.	+	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	+/-	+	+	+	+	+/-	+	+	+	-	-	+	+	-	+/-	-	+/-	-	-	+	+	-	-	-	-	-	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123423]	12041	-	+	+	+	-	+	-	-	+	+	+	+	-	+	-	+	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7656]	Sample type/isolated from	farmland soil
[Ref.: #7656]	Geographic location (country and/or sea, region)	Wu-Feng
[Ref.: #7656]	Country	Taiwan, Province of China
[Ref.: #7656]	Country ISO 3 Code	TWN
[Ref.: #7656]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Farmland soil in Wu-Feng
[Ref.: #67770]	Country	Taiwan, Province of China
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia

[Ref.: #123423]	Sample type/isolated from	Environment, Soil
[Ref.: #123423]	Country	Taiwan, Province of China
[Ref.: #123423]	Country ISO 3 Code	TWN
[Ref.: #123423]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ890521 (>99% sequence identity) for Paenibacillus taiwanensis subclade from Microbeatlas

Aquatic Samples	24
Soil Samples	46
Animal Samples	44
Plant Samples	15
Total Samples	129

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7656]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123423]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7656]	Paenibacillus taiwanensis strain BCRC 17411 16S ribosomal RNA gene, partial sequence	DQ890521	1537	GenBank ENA	401638 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus taiwanensis DSM 18679	GCA_000425125	scaffold	GenBank ENA	1122926 tax ID
[Ref.: #66792]	Paenibacillus taiwanensis DSM 18679	1122926.3	wgs	PATRIC	1122926 tax ID	*
[Ref.: #66792]	Paenibacillus taiwanensis DSM 18679	2524614883	draft	JGI IMG/M	1122926 tax ID	*

[Ref.: #7656]	GC-content	44.6 mol%
[Ref.: #67770]	GC-content	44.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus taiwanensis DSM 18679 PATRIC: 1122926.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	57.156	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	93.099	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	93.802	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	56.459	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	91.998	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	85.074	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus taiwanensis DSM 18679 NCBI: GCA_000425125
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	94.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	71.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	87.4
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	93.4

Availability in culture collections External links

[Ref.: #7656]

Culture collection no.

DSM 18679, IAM 15414, LMG 23799, BCRC 17411, JCM 23198, CIP 109674, KCTC 13628

[Ref.: #80830]

SI-ID 292881

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus taiwanensis sp. nov., isolated from soil in Taiwan.	Lee FL, Kuo HP, Tai CJ, Yokota A, Lo CC	Int J Syst Evol Microbiol	10.1099/ijs.0.64764-0	2007	*

References

#7656

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18679

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31986

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28240 (see below)

#33318 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80830

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID292881.1 )

#123423 Collection of Institut Pasteur ; Curators of the CIP; CIP 109674

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#28240

IJSEM 1351 2007 ( DOI 10.1099/ijs.0.64764-0 , PubMed 17551057 )

* These data were automatically processed and therefore are not curated

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Paenibacillus taiwanensis DSM 18679

Paenibacillus taiwanensis DSM 18679

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