Name: Paenibacillus gansuensis B518
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11602

Type strain:

Species: Paenibacillus gansuensis

Strain Designation: B518, 21.101

Culture col. no.: DSM 16968, CIP 109446, KCTC 3950

Strain history: CIP <- 2007, DSMZ <- JC. Lim, KRIBB, Daejon, Korea: strain B518

NCBI tax ID(s): 306542 (species)

SI-ID 232157

KCTC 3950, DSM 16968, LMG 24792, CIP 109446

Special Collections

Section

Paenibacillus gansuensis B518 is an aerobe, motile, rod-shaped bacterium that was isolated from soil.

motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus gansuensis**
	Full Scientific Name (LPSN)	Paenibacillus gansuensis Lim et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #119534]	Gram stain	positive

[Ref.: #119534]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #119534]	Motility	no
[Ref.: #67771]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6677]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #6677]

Culture medium growth

[Ref.: #6677]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6677]

Culture medium composition

expand / minimize

[Ref.: #36814]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #36814]

Culture medium growth

[Ref.: #36814]

Culture medium composition

expand / minimize

[Ref.: #119534]

Culture medium

CIP Medium 566

[Ref.: #119534]

Culture medium growth

[Ref.: #119534]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6677]	growth	30 °C
[Ref.: #36814]	growth	30 °C
[Ref.: #67771]	growth	35 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119534]		nitrate ChEBI	-	reduction
[Ref.: #119534]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #119534]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119534]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119534]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119534]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119534]	11869	-	-	+	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6677]	Sample type/isolated from	soil
[Ref.: #6677]	Country	Republic of Korea
[Ref.: #6677]	Country ISO 3 Code	KOR
[Ref.: #6677]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From a desert-soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Gansu Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #119534]	Sample type/isolated from	Environment, Soil
[Ref.: #119534]	Country	Republic of Korea
[Ref.: #119534]	Country ISO 3 Code	KOR
[Ref.: #119534]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY839866 (>99% sequence identity) for Paenibacillus gansuensis subclade from Microbeatlas

Aquatic Samples	8
Soil Samples	141
Animal Samples	1
Plant Samples	19
Total Samples	169

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6677]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119534]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6677]	Paenibacillus gansuensis strain B518 16S ribosomal RNA gene, partial sequence	AY839866	1529	GenBank ENA	306542 tax ID

[Ref.: #6677]	GC-content	50 mol%
[Ref.: #67771]	GC-content	50.0 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #6677]

Culture collection no.

DSM 16968, CIP 109446, KCTC 3950

[Ref.: #80828]

SI-ID 232157

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus contaminans sp. nov., isolated from a contaminated laboratory plate.	Chou JH, Lee JH, Lin MC, Chang PS, Arun AB, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.001495-0	2009	*
Phylogeny	Paenibacillus gansuensis sp. nov., isolated from desert soil of Gansu Province in China.	Lim JM, Jeon CO, Lee JC, Xu LH, Jiang CL, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64210-0	2006	*

References

#6677

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16968

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36814 ; Curators of the CIP;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80828

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID232157.1 )

#119534 Collection of Institut Pasteur ; Curators of the CIP; CIP 109446
* These data were automatically processed and therefore are not curated

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