Paenibacillus gansuensis (DSM 16968, CIP 109446, KCTC 3950)

Name: Paenibacillus gansuensis (DSM 16968, CIP 109446, KCTC 3950)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11602

Type strain

Strain Designation B518, 21.101

Culture col. no. DSM 16968 CIP 109446 KCTC 3950 B518 21.101

NCBI tax ID(s) 306542

Special Collections DSMZ KCTC CIP

History <- C.-J. Kim <- J.-M. Lim <- CJ Kim, KRIBB <- JM Lim, KRIBB CIP <- 2007, DSMZ <- JC. Lim, KRIBB, Daejon, Korea: strain B518

Links

Paenibacillus gansuensis B518 is an aerobe, motile, rod-shaped bacterium that was isolated from soil.

motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 232157

KCTC 3950,DSM 16968,LMG 24792,CIP 109446

@ref 20215

Last LPSN update 2026-02-09 11:20:36

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus gansuensis

Full scientific name Paenibacillus gansuensis Lim et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell shape
67771		rod-shaped
67771	positive
119534	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6677	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
36814	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
119534	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6677	positive	growth	30
36814	positive	growth	30
67771	positive	growth	35

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
119534	17632 ChEBI	nitrate	-	reduction
119534	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119534	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119534	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119534	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
119534	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119534	-	-	+	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6677	soil		Republic of Korea	KOR	Asia
67771	From a desert-soil	Gansu Province	China	CHN	Asia
119534	Environment, Soil		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY839866 (>99% sequence identity) for Paenibacillus gansuensis subclade from Microbeatlas

Aquatic Samples	8
Soil Samples	141
Animal Samples	1
Plant Samples	19
Total Samples	169

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6677	1	Risk group (German classification) According to TRBA 466
119534	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4268492v1 assembly for Paenibacillus gansuensis KCTC 3950	scaffold	GCA_042684925	306542	73.46

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6677	Paenibacillus gansuensis strain B518 16S ribosomal RNA gene, partial sequence	AY839866	1529		306542

GC content

@ref	GC-content (mol%)	Method
6677	50
67771	50.0	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus contaminans sp. nov., isolated from a contaminated laboratory plate.	Chou JH, Lee JH, Lin MC, Chang PS, Arun AB, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.001495-0	2009
Phylogeny	Paenibacillus gansuensis sp. nov., isolated from desert soil of Gansu Province in China.	Lim JM, Jeon CO, Lee JC, Xu LH, Jiang CL, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64210-0	2006

References

#6677	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16968
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36814	; Curators of the CIP;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119534	Collection of Institut Pasteur ; Curators of the CIP; CIP 109446
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus gansuensis (DSM 16968, CIP 109446, KCTC 3950)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042684925

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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