Strain identifier

BacDive ID: 11602

Type strain: Yes

Species: Paenibacillus gansuensis

Strain Designation: B518, 21.101

Strain history: CIP <- 2007, DSMZ <- JC. Lim, KRIBB, Daejon, Korea: strain B518

NCBI tax ID(s): 306542 (species)

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General

@ref: 6677

BacDive-ID: 11602

DSM-Number: 16968

keywords: 16S sequence, Bacteria, aerobe, motile, rod-shaped

description: Paenibacillus gansuensis B518 is an aerobe, motile, rod-shaped bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 306542
  • Matching level: species

strain history

@refhistory
6677<- C.-J. Kim <- J.-M. Lim
67771<- CJ Kim, KRIBB <- JM Lim, KRIBB
119534CIP <- 2007, DSMZ <- JC. Lim, KRIBB, Daejon, Korea: strain B518

doi: 10.13145/bacdive11602.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus gansuensis
  • full scientific name: Paenibacillus gansuensis Lim et al. 2006

@ref: 6677

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus gansuensis

full scientific name: Paenibacillus gansuensis Lim et al. 2006

strain designation: B518, 21.101

type strain: yes

Morphology

cell morphology

@refcell shapemotilitygram stain
67771rod-shapedyes
67771positive
119534rod-shapednopositive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6677R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
36814MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromatiyesDistilled water make up to (1000.000 ml);R2A agar (18.200 g)
119534CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566

culture temp

@refgrowthtypetemperature
6677positivegrowth30
36814positivegrowth30
67771positivegrowth35

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11953417632nitrate-reduction
11953416301nitrite-reduction

metabolite production

  • @ref: 119534
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
119534oxidase-
119534catalase-1.11.1.6
119534urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119534--+---+-----+-------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
6677soilRepublic of KoreaKORAsia
67771From a desert-soilChinaCHNAsiaGansu Province
119534Environment, SoilRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_83661.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_2038;97_2456;98_58066;99_83661&stattab=map
  • Last taxonomy: Paenibacillus gansuensis subclade
  • 16S sequence: AY839866
  • Sequence Identity:
  • Total samples: 169
  • soil counts: 141
  • aquatic counts: 8
  • animal counts: 1
  • plant counts: 19

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
66771Risk group (German classification)
1195341Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6677
  • description: Paenibacillus gansuensis strain B518 16S ribosomal RNA gene, partial sequence
  • accession: AY839866
  • length: 1529
  • database: nuccore
  • NCBI tax ID: 306542

GC content

@refGC-contentmethod
667750
6777150.0high performance liquid chromatography (HPLC)

External links

@ref: 6677

culture collection no.: DSM 16968, CIP 109446, KCTC 3950

straininfo link

  • @ref: 80828
  • straininfo: 232157

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16957110Paenibacillus gansuensis sp. nov., isolated from desert soil of Gansu Province in China.Lim JM, Jeon CO, Lee JC, Xu LH, Jiang CL, Kim CJInt J Syst Evol Microbiol10.1099/ijs.0.64210-02006Bacteria/genetics/*isolation & purification, Bacterial Physiological Phenomena, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/analysis, *Soil MicrobiologyGenetics
Phylogeny19126735Paenibacillus contaminans sp. nov., isolated from a contaminated laboratory plate.Chou JH, Lee JH, Lin MC, Chang PS, Arun AB, Young CC, Chen WMInt J Syst Evol Microbiol10.1099/ijs.0.001495-02009Bacteria, Aerobic/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Culture Media, DNA, Bacterial/analysis, *Equipment Contamination, Genes, rRNA, Genotype, *Laboratories, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Spores, Bacterial/physiologyCultivation

Reference

@idauthorscataloguedoi/urltitle
6677Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16968)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16968
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
36814Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7190
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80828Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID232157.1StrainInfo: A central database for resolving microbial strain identifiers
119534Curators of the CIPCollection of Institut Pasteur (CIP 109446)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109446