Name: Cohnella fontinalis YT-1101
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11450

Type strain:

Species: Cohnella fontinalis

Strain Designation: YT-1101

Culture col. no.: DSM 21753, NBRC 104957

Strain history: <- K. Ueda, Nihon Univ., College of Bioresource Sci., Fujisawa, Japan; YT-1101 <- Y. Tagami

NCBI tax ID(s): 477675 (species)

SI-ID 402837

DSM 21753

Special Collections

Section

Cohnella fontinalis YT-1101 is a microaerophile, spore-forming, Gram-negative bacterium that was isolated from fresh water of a fountain.

Gram-negative
motile
rod-shaped
spore-forming
microaerophile
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Cohnella*
	Species	**Cohnella fontinalis**
	Full Scientific Name (LPSN)	Cohnella fontinalis Shiratori et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29510]	Gram stain	negative

[Ref.: #29510]	Cell length	4 µm

[Ref.: #29510]	Cell width	0.6 µm

[Ref.: #29510]	Cell shape	rod-shaped

[Ref.: #29510]	Motility	yes

[Ref.: #29510]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15858]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #15858]

Culture medium growth

[Ref.: #15858]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15858]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15858]	growth	40 °C
[Ref.: #29510]	growth	25-55 °C
[Ref.: #29510]	optimum	40 °C

	pH	Kind of pH		pH
[Ref.: #29510]			optimum	6.5
[Ref.: #29510]			growth	5.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15858]	Oxygen tolerance	microaerophile
[Ref.: #29510]	Oxygen tolerance	aerobe

[Ref.: #29510]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29510]		NaCl		growth	<2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29510]	arabinose ChEBI	+	carbon source
[Ref.: #29510]	esculin ChEBI	+	hydrolysis
[Ref.: #29510]	glucose ChEBI	+	carbon source
[Ref.: #29510]	maltose ChEBI	+	carbon source
[Ref.: #29510]	mannitol ChEBI	+	carbon source
[Ref.: #29510]	mannose ChEBI	+	carbon source
[Ref.: #29510]	nitrate ChEBI	+	reduction

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29510]		catalase	+	1.11.1.6
[Ref.: #29510]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15858]	Sample type/isolated from	fresh water of a fountain
[Ref.: #15858]	Geographic location (country and/or sea, region)	Fujisawa
[Ref.: #15858]	Country	Japan
[Ref.: #15858]	Country ISO 3 Code	JPN
[Ref.: #15858]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB682232 (>99% sequence identity) for Cohnella fontinalis subclade from Microbeatlas

Aquatic Samples	24
Soil Samples	250
Animal Samples	27
Plant Samples	46
Total Samples	347

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15858]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15858]	Cohnella fontinalis gene for 16S rRNA, partial sequence	AB362828	1518	GenBank ENA	477675 tax ID
[Ref.: #20218]	Cohnella fontinalis gene for 16S rRNA, partial sequence, strain: NBRC 104957	AB682232	1479	GenBank ENA	477675 tax ID	*

[Ref.: #15858]	GC-content	58.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29510]	GC-content	58.6 mol%

Availability in culture collections External links

[Ref.: #15858]

Culture collection no.

DSM 21753, NBRC 104957

[Ref.: #80688]

SI-ID 402837

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cohnella fontinalis sp. nov., a xylanolytic bacterium isolated from fresh water.	Shiratori H, Tagami Y, Beppu T, Ueda K	Int J Syst Evol Microbiol	10.1099/ijs.0.014605-0	2009	*

References

#15858

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21753

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29510

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25909 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80688

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402837.1 )

#25909

IJSEM 1344 2010 ( DOI 10.1099/ijs.0.014605-0 , PubMed 19667368 )

* These data were automatically processed and therefore are not curated

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