Archive BacDiveID:10.13145/bacdive11450.20240510.9

Strain identifier

BacDive ID: 11450

Type strain:

Species: Cohnella fontinalis

Strain Designation: YT-1101

Strain history: <- K. Ueda, Nihon Univ., College of Bioresource Sci., Fujisawa, Japan; YT-1101 <- Y. Tagami

NCBI tax ID(s): 477675 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 15858

BacDive-ID: 11450

DSM-Number: 21753

keywords: 16S sequence, Bacteria, microaerophile, spore-forming, Gram-negative, motile, rod-shaped

description: Cohnella fontinalis YT-1101 is a microaerophile, spore-forming, Gram-negative bacterium that was isolated from fresh water of a fountain.

NCBI tax id

NCBI tax id: 477675
Matching level: species

strain history

@ref: 15858
history: <- K. Ueda, Nihon Univ., College of Bioresource Sci., Fujisawa, Japan; YT-1101 <- Y. Tagami

doi: 10.13145/bacdive11450.20240510.9

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Cohnella
species: Cohnella fontinalis
full scientific name: Cohnella fontinalis Shiratori et al. 2010

@ref: 15858

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Cohnella

species: Cohnella fontinalis

full scientific name: Cohnella fontinalis Shiratori et al. 2010

strain designation: YT-1101

type strain: yes

Morphology

cell morphology

@ref: 29510
gram stain: negative
cell length: 4 µm
cell width: 0.6 µm
cell shape: rod-shaped
motility: yes

pigmentation

@ref: 29510
production: yes

Culture and growth conditions

culture medium

@ref: 15858
name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
growth: yes
link: https://mediadive.dsmz.de/medium/693
composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@ref	growth	type	temperature
15858	positive	growth	40
29510	positive	growth	25-55
29510	positive	optimum	40

culture pH

@ref	ability	type	pH	PH range
29510	positive	growth	5.5-8.5	alkaliphile
29510	positive	optimum	6.5

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance
15858	microaerophile
29510	aerobe

spore formation

@ref: 29510
spore formation: yes

halophily

@ref: 29510
salt: NaCl
growth: positive
tested relation: growth
concentration: <2 %

metabolite utilization

@ref	Chebi-ID	metabolite	utilization activity	kind of utilization tested
29510	22599	arabinose	+	carbon source
29510	17234	glucose	+	carbon source
29510	17306	maltose	+	carbon source
29510	29864	mannitol	+	carbon source
29510	37684	mannose	+	carbon source
29510	4853	esculin	+	hydrolysis
29510	17632	nitrate	+	reduction

enzymes

@ref	value	activity	ec
29510	catalase	+	1.11.1.6
29510	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

isolation

@ref: 15858
sample type: fresh water of a fountain
geographic location: Fujisawa
country: Japan
origin.country: JPN
continent: Asia

isolation source categories

Cat1: #Environmental
Cat2: #Aquatic
Cat3: #Freshwater

taxonmaps

@ref: 69479
File name: preview.99_130411.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_22262;97_34506;98_44488;99_130411&stattab=map
Last taxonomy: Cohnella fontinalis subclade
16S sequence: AB682232
Sequence Identity:
Total samples: 347
soil counts: 250
aquatic counts: 24
animal counts: 27
plant counts: 46

Safety information

risk assessment

@ref: 15858
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Cohnella fontinalis gene for 16S rRNA, partial sequence, strain: NBRC 104957	AB682232	1479	nuccore	477675
15858	Cohnella fontinalis gene for 16S rRNA, partial sequence	AB362828	1518	nuccore	477675

GC content

@ref	GC-content	method
15858	58.6	high performance liquid chromatography (HPLC)
29510	58.6

External links

@ref: 15858

culture collection no.: DSM 21753, NBRC 104957

straininfo link

@ref: 80688
straininfo: 402837

literature

topic: Phylogeny
Pubmed-ID: 19667368
title: Cohnella fontinalis sp. nov., a xylanolytic bacterium isolated from fresh water.
authors: Shiratori H, Tagami Y, Beppu T, Ueda K
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijs.0.014605-0
year: 2009
mesh: Aerobiosis, Molecular Sequence Data, Paenibacillus/classification/*genetics/growth & development/isolation & purification/physiology, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Water Microbiology, Xylans/metabolism
topic2: Genetics

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed	ID_cross_reference
15858	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21753)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-21753
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
29510	Barberan A, Caceres Velazquez H, Jones S, Fierer N.		10.1128/mSphere.00237-17	Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information		28776041	25909
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
80688	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID402837.1	StrainInfo: A central database for resolving microbial strain identifiers