Name: Herbaspirillum aquaticum DSM 21191
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11369

Type strain:

Species: Herbaspirillum aquaticum

Culture col. no.: DSM 21191, ATCC BAA-1628, KCTC 32019, IEH 4430

Strain history: <- A.P. Dobritsa, Inst. Environmental Health, Lake Forest Park; IEH 4430 <- A. Scotti

NCBI tax ID(s): 568783 (species)

SI-ID 405192

DSM 21191

Section

Herbaspirillum aquaticum DSM 21191 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from deionized water.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Herbaspirillum*
	Species	**Herbaspirillum aquaticum**
	Full Scientific Name (LPSN)	Herbaspirillum aquaticum Dobritsa et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29246]	Gram stain	negative

[Ref.: #29246]	Cell length	2 µm

[Ref.: #29246]	Cell width	0.5 µm

[Ref.: #29246]	Cell shape	rod-shaped

[Ref.: #29246]	Motility	yes

[Ref.: #29246]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15436]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #15436]

Culture medium growth

[Ref.: #15436]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15436]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15436]	growth	28 °C
[Ref.: #29246]	growth	10-35 °C
[Ref.: #29246]	optimum	27.5 °C

[Ref.: #15436]	Temperature range	mesophilic
[Ref.: #29246]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29246]			optimum	6.5
[Ref.: #29246]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29246]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29246]	acetate ChEBI	+	carbon source
[Ref.: #29246]	adipate ChEBI	+	carbon source
[Ref.: #29246]	alanine ChEBI	+	carbon source
[Ref.: #29246]	arabinose ChEBI	+	carbon source
[Ref.: #29246]	asparagine ChEBI	+	carbon source
[Ref.: #29246]	aspartate ChEBI	+	carbon source
[Ref.: #29246]	citrate ChEBI	+	carbon source
[Ref.: #29246]	decanoate ChEBI	+	carbon source
[Ref.: #29246]	fructose ChEBI	+	carbon source
[Ref.: #29246]	fucose ChEBI	+	carbon source
[Ref.: #29246]	galactose ChEBI	+	carbon source
[Ref.: #29246]	galacturonate ChEBI	+	carbon source
[Ref.: #29246]	gluconate ChEBI	+	carbon source
[Ref.: #29246]	glucose ChEBI	+	carbon source
[Ref.: #29246]	glutamate ChEBI	+	carbon source
[Ref.: #29246]	glycerol ChEBI	+	carbon source
[Ref.: #29246]	itaconate ChEBI	+	carbon source
[Ref.: #29246]	L-arabitol ChEBI	+	carbon source
[Ref.: #29246]	lactate ChEBI	+	carbon source
[Ref.: #29246]	lactose ChEBI	+	carbon source
[Ref.: #29246]	mannitol ChEBI	+	carbon source
[Ref.: #29246]	mannose ChEBI	+	carbon source
[Ref.: #29246]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29246]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29246]	proline ChEBI	+	carbon source
[Ref.: #29246]	propionate ChEBI	+	carbon source
[Ref.: #29246]	quinate ChEBI	+	carbon source
[Ref.: #29246]	ribitol ChEBI	+	carbon source
[Ref.: #29246]	ribose ChEBI	+	carbon source
[Ref.: #29246]	sorbitol ChEBI	+	carbon source
[Ref.: #29246]	suberic acid ChEBI	+	carbon source
[Ref.: #29246]	succinate ChEBI	+	carbon source
[Ref.: #29246]	xylitol ChEBI	+	carbon source
[Ref.: #29246]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29246]	catalase	+	1.11.1.6
[Ref.: #29246]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29246]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15436]	Sample type/isolated from	deionized water
[Ref.: #15436]	Country	USA
[Ref.: #15436]	Country ISO 3 Code	USA
[Ref.: #15436]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ267649 (>99% sequence identity) for Herbaspirillum from Microbeatlas

Aquatic Samples	342
Soil Samples	197
Animal Samples	743
Plant Samples	411
Total Samples	1693

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15436]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15436]	Herbaspirillum aquaticum strain IEH 4430 16S ribosomal RNA gene, partial sequence	FJ267649	1455	ENA	568783 tax ID

[Ref.: #15436]	GC-content	62.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29246]	GC-content	62.1 mol%

Availability in culture collections External links

[Ref.: #15436]

Culture collection no.

DSM 21191, ATCC BAA-1628, KCTC 32019, IEH 4430

[Ref.: #80599]

SI-ID 405192

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Herbaspirillum robiniae sp. nov., isolated from root nodules of Robinia pseudoacacia in a lead-zinc mine.	Fan MC, Guo YQ, Zhang LP, Zhu YM, Chen WM, Lin YB, Wei GH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002666	2018	*
Phylogeny	Reclassification of Herbaspirillum putei as a later heterotypic synonym of Herbaspirillum huttiense, with the description of H. huttiense subsp. huttiense subsp. nov. and H. huttiense subsp. putei subsp. nov., comb. nov., and description of Herbaspirillum aquaticum sp. nov.	Dobritsa AP, Reddy MCS, Samadpour M	Int J Syst Evol Microbiol	10.1099/ijs.0.009381-0	2009	*

References

#15436

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21191

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29246

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25666 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80599

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405192.1 )

#25666

IJSEM 1418 2010 ( DOI 10.1099/ijs.0.009381-0 , PubMed 19671717 )

* These data were automatically processed and therefore are not curated

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