Name: Noviherbaspirillum aurantiacum SUEMI08
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11370

Type strain:

Species: Noviherbaspirillum aurantiacum

Strain Designation: SUEMI08

Culture col. no.: DSM 24251, CECT 7839, LMG 26150

Strain history: <- E. Velázquez Pérez, Depart. Microbiol. y Gen., Univ. Salamanca, Spain; SUEMI08 <- R. Rivas

NCBI tax ID(s): 1064517 (species)

SI-ID 371531

LMG 26150, CECT 7839, DSM 24251

Section

Noviherbaspirillum aurantiacum SUEMI08 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from old volcanic mountain soil.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Noviherbaspirillum*
	Species	**Noviherbaspirillum aurantiacum**
	Full Scientific Name (LPSN)	Noviherbaspirillum aurantiacum (Carro et al. 2012) Lin et al. 2013

Synonym

Herbaspirillum aurantiacum

Information on morphological and physiological properties Morphology

[Ref.: #30231]	Gram stain	negative

[Ref.: #30231]	Cell length	1.8 µm

[Ref.: #30231]	Cell width	0.95 µm

[Ref.: #30231]	Cell shape	rod-shaped

[Ref.: #30231]	Motility	yes

[Ref.: #30231]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17584]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #17584]

Culture medium growth

[Ref.: #17584]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17584]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17584]	growth	28 °C
[Ref.: #30231]	growth	15-34 °C
[Ref.: #30231]	optimum	28 °C

[Ref.: #17584]	Temperature range	mesophilic
[Ref.: #30231]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30231]			optimum	7
[Ref.: #30231]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30231]

Oxygen tolerance

aerobe

[Ref.: #30231]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30231]		NaCl		growth	1.50	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30231]	adipate ChEBI	+	carbon source
[Ref.: #30231]	citrate ChEBI	+	carbon source
[Ref.: #30231]	gluconate ChEBI	+	carbon source
[Ref.: #30231]	malate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30231]	acid phosphatase	+	3.1.3.2
[Ref.: #30231]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30231]	catalase	+	1.11.1.6
[Ref.: #30231]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30231]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17584]	Sample type/isolated from	old volcanic mountain soil
[Ref.: #17584]	Geographic location (country and/or sea, region)	Canary Islands, Tenerife
[Ref.: #17584]	Country	Spain
[Ref.: #17584]	Country ISO 3 Code	ESP
[Ref.: #17584]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Volcanic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ830497 (>99% sequence identity) for Herbaspirillum from Microbeatlas

Aquatic Samples	1801
Soil Samples	2964
Animal Samples	984
Plant Samples	3499
Total Samples	9248

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17584]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17584]	Noviherbaspirillum aurantiacum strain SUEMI08 16S ribosomal RNA gene, partial sequence	HQ830497	1525	ENA	1064517 tax ID

[Ref.: #17584]	GC-content	63.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #17584]	GC-content	60.4 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30231]	GC-content	60.4 mol%

Availability in culture collections External links

[Ref.: #17584]

Culture collection no.

DSM 24251, CECT 7839, LMG 26150

[Ref.: #80600]

SI-ID 371531

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Noviherbaspirillum aerium sp. nov., isolated from air.	Xue H, Piao CG, Lin YH, Bian DR, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004537	2020	*
Phylogeny	Noviherbaspirillum suwonense sp. nov., isolated from an air sample.	Kim SJ, Moon JY, Weon HY, Hong SB, Seok SJ, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.057372-0	2014	*
Phylogeny	Description of Noviherbaspirillum malthae gen. nov., sp. nov., isolated from an oil-contaminated soil, and proposal to reclassify Herbaspirillum soli, Herbaspirillum aurantiacum, Herbaspirillum canariense and Herbaspirillum psychrotolerans as Noviherbaspirillum soli comb. nov., Noviherbaspirillum aurantiacum comb. nov., Noviherbaspirillum canariense comb. nov. and Noviherbaspirillum psychrotolerans comb. nov. based on polyphasic analysis.	Lin SY, Hameed A, Arun AB, Liu YC, Hsu YH, Lai WA, Rekha PD, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.048231-0	2013	*
Phylogeny	Herbaspirillum canariense sp. nov., Herbaspirillum aurantiacum sp. nov. and Herbaspirillum soli sp. nov., isolated from volcanic mountain soil, and emended description of the genus Herbaspirillum.	Carro L, Rivas R, Leon-Barrios M, Gonzalez-Tirante M, Velazquez E, Valverde A	Int J Syst Evol Microbiol	10.1099/ijs.0.031336-0	2011	*

References

#17584

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24251

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30231

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26574 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80600

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID371531.1 )

#26574

IJSEM 1300 2012 ( DOI 10.1099/ijs.0.031336-0 , PubMed 21788228 )

* These data were automatically processed and therefore are not curated

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