Name: Herbaspirillum rubrisubalbicans B579
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11356

Type strain:

Species: Herbaspirillum rubrisubalbicans

Strain Designation: B579

Variant: Isotype of BacDive ID 11357

Culture col. no.: DSM 9440, ATCC 19308, DSM 11543, LMG 2286, NCPPB 1027, JCM 21447, BCRC 15833, CCUG 17392, CCUG 17679, CFBP 1202, CIP 105019, IAM 14976, ICMP 5777, KACC 12181, NBRC 102523, PDDCC 5777

Strain history: CIP <- 1996, LMG <- 1981, NCPPB <- 1961, A. Hayward: strain B579

NCBI tax ID(s): 1223495 (strain), 80842 (species)

SI-ID 4234

LMG 2286, ATCC 19308, ICMP 5777, NCPPB 1027, PDDCC 5777, DSM 9440, CCUG 17392, CIP 105019, DSM 11543, CCUG 17679, BCRC 15833, CCRC 15833, IAM 14976, CFBP 1202, KCTC 12138, NBRC 102523, JCM 21447

Other strains from Herbaspirillum rubrisubalbicans

Section

Herbaspirillum rubrisubalbicans B579 is an obligate aerobe, mesophilic, motile plant pathogen that was isolated from Saccharum officinarum.

motile
mesophilic
obligate aerobe
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Herbaspirillum*
	Species	**Herbaspirillum rubrisubalbicans**
	Full Scientific Name (LPSN)	Herbaspirillum rubrisubalbicans (Christopher and Edgerton 1930) Baldani et al. 1996

	Synonym	"Phytomonas* rubrisubalbicans"*
	Synonym	Pseudomonas rubrisubalbicans

Information on morphological and physiological properties Morphology

[Ref.: #122291]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #122291]	Cell shape	rod-shaped

[Ref.: #122291]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.599

[Ref.: #122291]	Pigment production	no
[Ref.: #122291]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3573]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #3573]

Culture medium growth

[Ref.: #3573]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3573]

Culture medium composition

expand / minimize

[Ref.: #3573]

Culture medium

NUTRIENT AGAR (OXOID CM3) WITH PHOSPHATE (DSMZ Medium 605a)

[Ref.: #3573]

Culture medium growth

[Ref.: #3573]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3573]

Culture medium composition

expand / minimize

[Ref.: #41431]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #41431]

Culture medium growth

[Ref.: #41431]

Culture medium composition

expand / minimize

[Ref.: #122291]

Culture medium

CIP Medium 3

[Ref.: #122291]

Culture medium growth

[Ref.: #122291]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122291]

Culture medium

CIP Medium 212

[Ref.: #122291]

Culture medium growth

[Ref.: #122291]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122291]

Culture medium

CIP Medium 203

[Ref.: #122291]

Culture medium growth

[Ref.: #122291]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122291]

Culture medium

CIP Medium 9

[Ref.: #122291]

Culture medium growth

[Ref.: #122291]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3573]		growth	25 °C
[Ref.: #41431]		growth	30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #122291]		growth	25-41 °C
[Ref.: #122291]	no	growth	5 °C
[Ref.: #122291]	no	growth	10 °C

[Ref.: #3573]	Temperature range	mesophilic
[Ref.: #41431]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #122291]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122291]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #122291]	NaCl		growth	0-2	%
[Ref.: #122291]	NaCl	no	growth	4	%
[Ref.: #122291]	NaCl	no	growth	6	%
[Ref.: #122291]	NaCl	no	growth	8	%
[Ref.: #122291]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122291]	citrate ChEBI	+	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122291]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122291]	nitrate ChEBI	+	reduction
[Ref.: #122291]	nitrate ChEBI	-	respiration
[Ref.: #122291]	nitrite ChEBI	-	reduction
[Ref.: #122291]	phenol ChEBI	-	degradation
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122291]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #122291]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122291]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122291]	amylase	-
[Ref.: #122291]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122291]	caseinase	-	3.4.21.50
[Ref.: #122291]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #122291]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #122291]	gelatinase	-
[Ref.: #122291]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122291]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122291]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122291]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122291]	oxidase	+
[Ref.: #122291]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122291]	tryptophan deaminase	-
[Ref.: #122291]	tween esterase	-
[Ref.: #122291]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122291]	9872	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122291]	974	not determinedn.d.	+	+	+	-	+	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	+	+	-	-	+	-	+	+	+	-	-	+	-	+	-	-	+	+	-	+	+	-	-	+	-	-	-	+	+	+	+	+	+	+	+	+	+	+	-	-	+	+	+	+	+	-	-	+	-	-	-	-	-	+	-	+	+	+	-	+	+	-	+	-	+	-	-	+	+	+	+	+	-	+	+	-	+	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122291]	8384	-	+	+	-	-	+	-	+	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3573]	Sample type/isolated from	Saccharum officinarum
[Ref.: #3573]	Host species	Saccharum officinarum
[Ref.: #3573]	Country	USA
[Ref.: #3573]	Country ISO 3 Code	USA
[Ref.: #3573]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Saccharum officinalis
[Ref.: #67770]	Host species	Saccharum officinalis
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #122291]	Sample type/isolated from	Saccharum officinarum
[Ref.: #122291]	Country	United States of America
[Ref.: #122291]	Country ISO 3 Code	USA
[Ref.: #122291]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF137508 (>99% sequence identity) for Herbaspirillum from Microbeatlas

Aquatic Samples	1120
Soil Samples	646
Animal Samples	1886
Plant Samples	1556
Total Samples	5208

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3573]	Pathogenicity (plant)	yes
[Ref.: #3573]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122291]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3573]	Herbaspirillum rubrisubalbicans 16S ribosomal RNA gene, partial sequence	AF137508	1485	ENA	80842 tax ID
[Ref.: #20218]	Herbaspirillum rubrisubalbicans gene for 16S rRNA, strain: ATCC 19308T	AB021424	1451	ENA	80842 tax ID	*
[Ref.: #20218]	Herbaspirillum rubrisubalbicans gene for 16S rRNA, partial sequence, strain: NBRC 102523	AB681857	1458	ENA	80842 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Herbaspirillum rubrisubalbicans NBRC 102523	GCA_001591225	contig	GenBank	1223495 tax ID
[Ref.: #66792]	Herbaspirillum rubrisubalbicans DSM 11543	GCA_003719195	complete	GenBank	80842 tax ID	*
[Ref.: #66792]	Herbaspirillum rubrisubalbicans NBRC 102523	1223495.3	wgs	PATRIC	1223495 tax ID	*
[Ref.: #66792]	Herbaspirillum rubrisubalbicans strain DSM 11543	80842.11	complete	PATRIC	80842 tax ID	*
[Ref.: #66792]	Herbaspirillum rubrisubalbicans NBRC 102523	2681812979	draft	JGI IMG/M	1223495 tax ID	*

[Ref.: #67770]

GC-content

62.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Herbaspirillum rubrisubalbicans DSM 11543 NCBI: GCA_003719195.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Herbaspirillum rubrisubalbicans DSM 11543 NCBI: GCA_003719195.1
[Ref.: #69480]	motile	yes	89.455	no
[Ref.: #69480]	flagellated	yes	54.296	no
[Ref.: #69480]	gram-positive	no	99.129	no
[Ref.: #69480]	anaerobic	no	98.931	no
[Ref.: #69480]	aerobic	yes	83.024	no
[Ref.: #69480]	halophile	no	95.879	no
[Ref.: #69480]	spore-forming	no	93.607	no
[Ref.: #69480]	thermophile	no	99.129	no
[Ref.: #69480]	glucose-util	yes	87.081	no
[Ref.: #69480]	glucose-ferment	no	89.513	no

Availability in culture collections External links

[Ref.: #3573]

Culture collection no.

DSM 9440, ATCC 19308, DSM 11543, LMG 2286, NCPPB 1027, JCM 21447, BCRC 15833, CCUG 17392, CCUG 17679, CFBP 1202, CIP 105019, IAM 14976, ICMP 5777, KACC 12181, NBRC 102523, PDDCC 5777

[Ref.: #80588]

SI-ID 4234

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Emended description of Herbaspirillum; inclusion of [Pseudomonas] rubrisubalbicans, a milk plant pathogen, as Herbaspirillum rubrisubalbicans comb. nov.; and classification of a group of clinical isolates (EF group 1) as Herbaspirillum species 3.	Baldani JI, Pot B, Kirchhof G, Falsen E, Baldani VL, Olivares FL, Hoste B, Kersters K, Hartmann A, Gillis M, Dobereiner J	Int J Syst Bacteriol	10.1099/00207713-46-3-802	1996	*

References

#3573

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9440

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41431 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80588

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4234.1 )

#122291 Collection of Institut Pasteur ; Curators of the CIP; CIP 105019
* These data were automatically processed and therefore are not curated

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Herbaspirillum rubrisubalbicans DSM 11543

Herbaspirillum rubrisubalbicans DSM 11543

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