Strain identifier

BacDive ID: 11356

Type strain: Yes

Species: Herbaspirillum rubrisubalbicans

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3573

BacDive-ID: 11356

DSM-Number: 9440

keywords: mesophilic, Bacteria, 16S sequence, genome sequence, plant pathogen

description: Herbaspirillum rubrisubalbicans DSM 9440 is a mesophilic plant pathogen that was isolated from Saccharum officinarum.

strain history: <- LMG

doi: 10.13145/bacdive11356.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Herbaspirillum
  • species: Herbaspirillum rubrisubalbicans
  • full scientific name: Herbaspirillum rubrisubalbicans (Christopher and Edgerton 1930) Baldani et al. 1996
  • synonyms

    @refsynonym
    20215Phytomonas rubrisubalbicans
    20215Pseudomonas rubrisubalbicans

@ref: 3573

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Herbaspirillum

species: Herbaspirillum rubrisubalbicans

full scientific name: Herbaspirillum rubrisubalbicans (Christopher and Edgerton 1930) Baldani et al. 1996

variant: Isotype of BacDive ID 11357

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3573R2A MEDIUM (DSMZ Medium 830)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf
3573NUTRIENT AGAR (OXOID CM3) WITH PHOSPHATE (DSMZ Medium 605a)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium605a.pdf
41431MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
3573positivegrowth25mesophilic
41431positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 3573
  • sample type: Saccharum officinarum
  • host species: Saccharum officinarum
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 3573
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Herbaspirillum rubrisubalbicans gene for 16S rRNA, strain: ATCC 19308TAB0214241451ena80842
20218Herbaspirillum rubrisubalbicans gene for 16S rRNA, partial sequence, strain: NBRC 102523AB6818571458ena80842
3573Herbaspirillum rubrisubalbicans 16S ribosomal RNA gene, partial sequenceAF1375081485ena80842

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Herbaspirillum rubrisubalbicans DSM 11543GCA_003719195completencbi80842
66792Herbaspirillum rubrisubalbicans strain DSM 1154380842.11completepatric80842

External links

@ref: 3573

culture collection no.: DSM 9440, ATCC 19308, DSM 11543, LMG 2286, NCPPB 1027

straininfo link

@refpassport
20218http://www.straininfo.net/strains/99970
20218http://www.straininfo.net/strains/18167
20218http://www.straininfo.net/strains/161426
20218http://www.straininfo.net/strains/18166
20218http://www.straininfo.net/strains/18170

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3573Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9440)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9440
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41431Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16992
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)