Massilia suwonensis (DSM 21311, KACC 12635, 5414S-25)

Name: Massilia suwonensis (DSM 21311, KACC 12635, 5414S-25)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11337

Type strain

Strain Designation 5414S-25

Culture col. no. DSM 21311 KACC 12635 5414S-25

NCBI tax ID(s) 648895

Special Collections DSMZ Literature strains

Links

Massilia suwonensis 5414S-25 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from air.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 370401

DSM 21311,KACC 12635

@ref 20215

Last LPSN update 2025-12-16 09:49:34

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Oxalobacteraceae

Genus Massilia

Species Massilia suwonensis

Full scientific name Massilia suwonensis (Weon et al. 2010) Kämpfer et al. 2011

Synonyms (2)

Naxibacter suwonensis
Telluria suwonensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29541	negative	1.2-3 µm	0.6-0.8 µm	rod-shaped

Pigmentation

29541

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15508	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15508	positive	growth	30	mesophilic
29541	positive	growth	05-40
29541	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH
29541	positive	optimum	7
29541	positive	growth	06-09

Physiology and metabolism

Oxygen tolerance

29541

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29541	NaCl	positive	growth	0-1 %

Observation

29541

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29541	37054 ChEBI	3-hydroxybutyrate	+	carbon source
29541	17128 ChEBI	adipate	+	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
29541	16449 ChEBI	alanine	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
29541	28087 ChEBI	glycogen	+	carbon source
29541	27570 ChEBI	histidine	+	carbon source
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
29541	25115 ChEBI	malate	+	carbon source
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
29541	17306 ChEBI	maltose	+	carbon source
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
29541	18401 ChEBI	phenylacetate	+	carbon source
29541	26271 ChEBI	proline	+	carbon source
29541	17272 ChEBI	propionate	+	carbon source
29541	17822 ChEBI	serine	+	carbon source
29541	9300 ChEBI	suberic acid	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
29541	31011 ChEBI	valerate	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
29541	catalase	+	1.11.1.6
29541	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
15508	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Air

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15508	air	Suwon region	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15508	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265566v1 assembly for Massilia suwonensis KACC 12635	scaffold	GCA_042655665	648895	65.23

Genome browser: GCA_042655665

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15508	Naxibacter sp. 5414S-25 16S ribosomal RNA gene, partial sequence	FJ969487	1414		648895

GC content

15508

GC-content (mol%)67.8

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Massilia jejuensis sp. nov. and Naxibacter suwonensis sp. nov., isolated from air samples.	Weon HY, Yoo SH, Kim SJ, Kim YS, Anandham R, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.015479-0	2009

References

#15508	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21311
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29541	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25937 (see below)
#68369	Automatically annotated from API 20NE .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Massilia suwonensis (DSM 21311, KACC 12635, 5414S-25)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042655665

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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