Strain identifier
BacDive ID: 11337
Type strain: 
Species: Massilia suwonensis
Strain Designation: 5414S-25
Culture col. no.: DSM 21311, KACC 12635
version 5.0 (current version)
General
@ref: 15508
BacDive-ID: 11337
DSM-Number: 21311
keywords: gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, motile, rod-shaped
description: Massilia suwonensis 5414S-25 is an aerobe, mesophilic, gram-negative bacterium that was isolated from air.
strain history: <- S.-W. Kwon; 5414S-25
doi: 10.13145/bacdive11337.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Massilia
- species: Massilia suwonensis
- full scientific name: Massilia suwonensis (Weon et al. 2010) Kämpfer et al. 2011
synonyms
- @ref: 20215
- synonym: Naxibacter suwonensis
@ref: 15508
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Massilia
species: Massilia suwonensis
full scientific name: Massilia suwonensis (Weon et al. 2010) Kämpfer et al. 2011
strain designation: 5414S-25
type strain: yes
Morphology
cell morphology
- @ref: 29541
- gram stain: negative
- cell length: 1.2-3 µm
- cell width: 0.6-0.8 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29541
- production: yes
Culture and growth conditions
culture medium
- @ref: 15508
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15508 | positive | growth | 30 | mesophilic |
| 29541 | positive | growth | 05-40 | |
| 29541 | positive | optimum | 30 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 29541 | positive | growth | 06-09 |
| 29541 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29541
- oxygen tolerance: aerobe
halophily
- @ref: 29541
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1 %
observation
- @ref: 29541
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29541 | 37054 | 3-hydroxybutyrate | + | carbon source |
| 29541 | 17128 | adipate | + | carbon source |
| 29541 | 16449 | alanine | + | carbon source |
| 29541 | 28087 | glycogen | + | carbon source |
| 29541 | 27570 | histidine | + | carbon source |
| 29541 | 25115 | malate | + | carbon source |
| 29541 | 17306 | maltose | + | carbon source |
| 29541 | 18401 | phenylacetate | + | carbon source |
| 29541 | 26271 | proline | + | carbon source |
| 29541 | 17272 | propionate | + | carbon source |
| 29541 | 17822 | serine | + | carbon source |
| 29541 | 9300 | suberic acid | + | carbon source |
| 29541 | 31011 | valerate | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29541 | catalase | + | 1.11.1.6 |
| 29541 | cytochrome oxidase | + | 1.9.3.1 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15508 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 15508
- sample type: air
- geographic location: Suwon region
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Air
Safety information
risk assessment
- @ref: 15508
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15508
- description: Naxibacter sp. 5414S-25 16S ribosomal RNA gene, partial sequence
- accession: FJ969487
- length: 1414
- database: ena
- NCBI tax ID: 648895
GC content
- @ref: 15508
- GC-content: 67.8
External links
@ref: 15508
culture collection no.: DSM 21311, KACC 12635
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/855506 |
| 20218 | http://www.straininfo.net/strains/855507 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 15508 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21311) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21311 | ||||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 25937 | 10.1099/ijs.0.015479-0 | ||||||
| 29541 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25937 |