Strain identifier

BacDive ID: 11337

Type strain: Yes

Species: Massilia suwonensis

Strain Designation: 5414S-25

Strain history: <- S.-W. Kwon; 5414S-25

NCBI tax ID(s): 648895 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15508

BacDive-ID: 11337

DSM-Number: 21311

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Massilia suwonensis 5414S-25 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from air.

NCBI tax id

  • NCBI tax id: 648895
  • Matching level: species

strain history

  • @ref: 15508
  • history: <- S.-W. Kwon; 5414S-25

doi: 10.13145/bacdive11337.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Massilia
  • species: Massilia suwonensis
  • full scientific name: Massilia suwonensis (Weon et al. 2010) Kämpfer et al. 2011
  • synonyms

    @refsynonym
    20215Telluria suwonensis
    20215Naxibacter suwonensis

@ref: 15508

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Massilia

species: Massilia suwonensis

full scientific name: Massilia suwonensis (Weon et al. 2010) Kämpfer et al. 2011

strain designation: 5414S-25

type strain: yes

Morphology

cell morphology

  • @ref: 29541
  • gram stain: negative
  • cell length: 1.2-3 µm
  • cell width: 0.6-0.8 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 29541
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 15508
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15508positivegrowth30mesophilic
29541positivegrowth05-40
29541positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
29541positivegrowth06-09alkaliphile
29541positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29541
  • oxygen tolerance: aerobe

halophily

  • @ref: 29541
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %

observation

  • @ref: 29541
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29541370543-hydroxybutyrate+carbon source
2954117128adipate+carbon source
2954116449alanine+carbon source
2954128087glycogen+carbon source
2954127570histidine+carbon source
2954125115malate+carbon source
2954117306maltose+carbon source
2954118401phenylacetate+carbon source
2954126271proline+carbon source
2954117272propionate+carbon source
2954117822serine+carbon source
295419300suberic acid+carbon source
2954131011valerate+carbon source
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
29541catalase+1.11.1.6
29541cytochrome oxidase+1.9.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
15508--------------------+

Isolation, sampling and environmental information

isolation

  • @ref: 15508
  • sample type: air
  • geographic location: Suwon region
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Air

Safety information

risk assessment

  • @ref: 15508
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15508
  • description: Naxibacter sp. 5414S-25 16S ribosomal RNA gene, partial sequence
  • accession: FJ969487
  • length: 1414
  • database: ena
  • NCBI tax ID: 648895

GC content

  • @ref: 15508
  • GC-content: 67.8

External links

@ref: 15508

culture collection no.: DSM 21311, KACC 12635

straininfo link

  • @ref: 80570
  • straininfo: 370401

literature

  • topic: Phylogeny
  • Pubmed-ID: 19783608
  • title: Massilia jejuensis sp. nov. and Naxibacter suwonensis sp. nov., isolated from air samples.
  • authors: Weon HY, Yoo SH, Kim SJ, Kim YS, Anandham R, Kwon SW
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.015479-0
  • year: 2009
  • mesh: *Air Microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Oxalobacteraceae/*classification/genetics/*isolation & purification/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15508Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21311)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21311
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29541Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2593728776041
68369Automatically annotated from API 20NE
80570Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID370401.1StrainInfo: A central database for resolving microbial strain identifiers