Strain identifier

BacDive ID: 11337

Type strain: Yes

Species: Massilia suwonensis

Strain Designation: 5414S-25

Culture col. no.: DSM 21311, KACC 12635

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15508

BacDive-ID: 11337

DSM-Number: 21311

keywords: gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, motile, rod-shaped

description: Massilia suwonensis 5414S-25 is an aerobe, mesophilic, gram-negative bacterium that was isolated from air.

strain history: <- S.-W. Kwon; 5414S-25

doi: 10.13145/bacdive11337.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Massilia
  • species: Massilia suwonensis
  • full scientific name: Massilia suwonensis (Weon et al. 2010) Kämpfer et al. 2011
  • synonyms

    • @ref: 20215
    • synonym: Naxibacter suwonensis

@ref: 15508

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Massilia

species: Massilia suwonensis

full scientific name: Massilia suwonensis (Weon et al. 2010) Kämpfer et al. 2011

strain designation: 5414S-25

type strain: yes

Morphology

cell morphology

  • @ref: 29541
  • gram stain: negative
  • cell length: 1.2-3 µm
  • cell width: 0.6-0.8 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 29541
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 15508
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf

culture temp

@refgrowthtypetemperaturerange
15508positivegrowth30mesophilic
29541positivegrowth05-40
29541positiveoptimum30mesophilic

culture pH

@refabilitytypepH
29541positivegrowth06-09
29541positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29541
  • oxygen tolerance: aerobe

halophily

  • @ref: 29541
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %

observation

  • @ref: 29541
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29541370543-hydroxybutyrate+carbon source
2954117128adipate+carbon source
2954116449alanine+carbon source
2954128087glycogen+carbon source
2954127570histidine+carbon source
2954125115malate+carbon source
2954117306maltose+carbon source
2954118401phenylacetate+carbon source
2954126271proline+carbon source
2954117272propionate+carbon source
2954117822serine+carbon source
295419300suberic acid+carbon source
2954131011valerate+carbon source

enzymes

@refvalueactivityec
29541catalase+1.11.1.6
29541cytochrome oxidase+1.9.3.1

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
15508--------------------+

Isolation, sampling and environmental information

isolation

  • @ref: 15508
  • sample type: air
  • geographic location: Suwon region
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Air

Safety information

risk assessment

  • @ref: 15508
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15508
  • description: Naxibacter sp. 5414S-25 16S ribosomal RNA gene, partial sequence
  • accession: FJ969487
  • length: 1414
  • database: ena
  • NCBI tax ID: 648895

GC content

  • @ref: 15508
  • GC-content: 67.8

External links

@ref: 15508

culture collection no.: DSM 21311, KACC 12635

straininfo link

@refpassport
20218http://www.straininfo.net/strains/855506
20218http://www.straininfo.net/strains/855507

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
15508Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21311)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21311
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2593710.1099/ijs.0.015479-0
29541Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information25937