Name: Thalassolituus maritimus 2O1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11298

Type strain:

Species: Thalassolituus maritimus

Strain Designation: 2O1

Culture col. no.: DSM 24913, BTCC B-675, NBRC 105760, CIP 110300

Strain history: CIP <- 2011, NBRC

NCBI tax ID(s): 484498 (species)

SI-ID 376142

NBRC 105760, CIP 110300

Section

Thalassolituus maritimus 2O1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Thalassolituus*
	Species	**Thalassolituus maritimus**
	Full Scientific Name (LPSN)	Thalassolituus maritimus Dong et al. 2023

Synonym

Oleibacter marinus

Information on morphological and physiological properties Morphology

[Ref.: #29682]	Gram stain	negative
[Ref.: #120818]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.982

[Ref.: #29682]	Cell length	2.15 µm

[Ref.: #29682]	Cell width	0.45 µm

[Ref.: #29682]	Cell shape	rod-shaped
[Ref.: #120818]	Cell shape	rod-shaped

[Ref.: #29682]	Motility	yes
[Ref.: #120818]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %90.719

Multimedia content

[Ref.: #17799]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17799]

Culture medium

MARINE MEDIUM WITH PYRUVATE (DSMZ Medium 1303)

[Ref.: #17799]

Culture medium growth

[Ref.: #17799]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17799]

Culture medium composition

expand / minimize

[Ref.: #40545]

Culture medium

Marine agar (MA)

[Ref.: #40545]

Culture medium growth

[Ref.: #40545]

Culture medium composition

expand / minimize

[Ref.: #120818]

Culture medium

CIP Medium 13

[Ref.: #120818]

Culture medium growth

[Ref.: #120818]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17799]	growth	28 °C
[Ref.: #29682]	growth	10-40 °C
[Ref.: #29682]	optimum	27.5 °C
[Ref.: #40545]	growth	30 °C

[Ref.: #17799]	Temperature range	mesophilic
[Ref.: #29682]	Temperature range	mesophilic
[Ref.: #40545]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29682]			optimum	8
[Ref.: #29682]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29682]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29682]		NaCl		growth	01-07	%
[Ref.: #29682]		NaCl		optimum	4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29682]	acetate ChEBI	+	carbon source
[Ref.: #29682]	glutamate ChEBI	+	carbon source
[Ref.: #29682]	nitrate ChEBI	+	reduction
[Ref.: #120818]	nitrate ChEBI	+	reduction
[Ref.: #120818]	nitrite ChEBI	-	reduction
[Ref.: #29682]	propionate ChEBI	+	carbon source
[Ref.: #29682]	pyruvate ChEBI	+	carbon source
[Ref.: #29682]	tween 40 ChEBI	+	carbon source
[Ref.: #29682]	tween 80 ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #120818]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #29682]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #29682]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29682]	catalase	+	1.11.1.6
[Ref.: #120818]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29682]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #29682]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120818]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #29682]	urease	+	3.5.1.5
[Ref.: #120818]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120818]	12502	-	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17799]	Sample type/isolated from	seawater
[Ref.: #17799]	Geographic location (country and/or sea, region)	Pari Island (5.86° S 106.62° E)
[Ref.: #17799]	Country	Indonesia
[Ref.: #17799]	Country ISO 3 Code	IDN
[Ref.: #17799]	Continent	Asia

[Ref.: #120818]	Sample type/isolated from	Environment, Seawater
[Ref.: #120818]	Geographic location (country and/or sea, region)	Pari Island, Jakarta
[Ref.: #120818]	Country	Indonesia
[Ref.: #120818]	Country ISO 3 Code	IDN
[Ref.: #120818]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB435649 (>99% sequence identity) for Oleibacter marinus subclade from Microbeatlas

Aquatic Samples	4827
Soil Samples	196
Animal Samples	376
Plant Samples	79
Total Samples	5478

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17799]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120818]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17799]	Oleibacter marinus gene for 16S rRNA, partial sequence, strain: 2O1	AB435649	1455	ENA	484498 tax ID
[Ref.: #20218]	Oleibacter marinus gene for 16S rRNA, partial sequence, strain: NBRC 105760	AB682295	1458	ENA	484498 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thalassolituus maritimus DSM 24913	GCA_900156675	scaffold	GenBank	484498 tax ID	*
[Ref.: #66792]	Oleibacter marinus strain DSM 24913	484498.3	wgs	PATRIC	484498 tax ID	*
[Ref.: #66792]	Oleibacter marinus DSM 24913	2681813515	draft	JGI IMG/M	484498 tax ID	*

[Ref.: #17799]	GC-content	53.0-53.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29682]	GC-content	53 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Oleibacter marinus DSM 24913 NCBI: GCA_900156675.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oleibacter marinus DSM 24913 NCBI: GCA_900156675.1
[Ref.: #69480]	motile	yes	90.683	yes
[Ref.: #69480]	flagellated	yes	88.365	no
[Ref.: #69480]	gram-positive	no	98.869	yes
[Ref.: #69480]	anaerobic	no	96.751	yes
[Ref.: #69480]	aerobic	yes	92.452	yes
[Ref.: #69480]	halophile	yes	82.228	no
[Ref.: #69480]	spore-forming	no	96.378	no
[Ref.: #69480]	thermophile	no	99.582	yes
[Ref.: #69480]	glucose-util	no	54.127	no
[Ref.: #69480]	glucose-ferment	no	90.158	no

Availability in culture collections External links

[Ref.: #17799]

Culture collection no.

DSM 24913, BTCC B-675, NBRC 105760, CIP 110300

[Ref.: #80531]

SI-ID 376142

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oleibacter marinus gen. nov., sp. nov., a bacterium that degrades petroleum aliphatic hydrocarbons in a tropical marine environment.	Teramoto M, Ohuchi M, Hatmanti A, Darmayati Y, Widyastuti Y, Harayama S, Fukunaga Y	Int J Syst Evol Microbiol	10.1099/ijs.0.018671-0	2010	*

References

#17799

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24913

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29682

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26067 (see below)

#40545 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80531

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID376142.1 )

#120818 Collection of Institut Pasteur ; Curators of the CIP; CIP 110300

#26067

IJSEM 375 2011 ( DOI 10.1099/ijs.0.018671-0 , PubMed 20305063 )

* These data were automatically processed and therefore are not curated

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Oleibacter marinus DSM 24913

Oleibacter marinus DSM 24913

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