Strain identifier

BacDive ID: 11298

Type strain: Yes

Species: Thalassolituus maritimus

Strain Designation: 2O1

Strain history: CIP <- 2011, NBRC

NCBI tax ID(s): 484498 (species)

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General

@ref: 17799

BacDive-ID: 11298

DSM-Number: 24913

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Thalassolituus maritimus 2O1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 484498
  • Matching level: species

strain history

@refhistory
405452011, NBRC
17799<- NBRC <- M. Teramoto, NITE (Natl. Inst. of Technol. and Evaluation), Chiba, Japan and Y. Widyastuti, LIPI, Cibinong, Indonesia
120818CIP <- 2011, NBRC

doi: 10.13145/bacdive11298.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Oceanospirillaceae
  • genus: Thalassolituus
  • species: Thalassolituus maritimus
  • full scientific name: Thalassolituus maritimus Dong et al. 2023

  • synonyms

    • @ref: 20215
    • synonym: Oleibacter marinus

@ref: 17799

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Oleibacter

species: Oleibacter marinus

full scientific name: Oleibacter marinus Teramoto et al. 2011

strain designation: 2O1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29682negative2.15 µm0.45 µmrod-shapedyes
69480yes90.719
69480negative99.982
120818negativerod-shapedyes

multimedia

  • @ref: 17799
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_24913.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17799MARINE MEDIUM WITH PYRUVATE (DSMZ Medium 1303)yeshttps://mediadive.dsmz.de/medium/1303Name: MARINE MEDIUM WITH PYRUVATE (DSMZ Medium 1303) Composition: NaCl 21.1 g/l Agar 16.0 g/l Na-pyruvate 5.0 g/l Marine Broth 3.7 g/l MgCl2 x 6 H2O 3.6 g/l MgSO4 x 7 H2O 2.62 g/l CaCl2 x 2 H2O 1.2 g/l KCl 0.58 g/l NaHCO3 0.0800003 g/l Distilled water
40545Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
120818CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
17799positivegrowth28mesophilic
29682positivegrowth10-40
29682positiveoptimum27.5mesophilic
40545positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
29682positivegrowth06-10alkaliphile
29682positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 29682
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.994

halophily

@refsaltgrowthtested relationconcentration
29682NaClpositivegrowth01-07 %
29682NaClpositiveoptimum4 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2968230089acetate+carbon source
2968229987glutamate+carbon source
2968217272propionate+carbon source
2968215361pyruvate+carbon source
2968253423tween 40+carbon source
2968253426tween 80+carbon source
2968217632nitrate+reduction
12081817632nitrate+reduction
12081816301nitrite-reduction

metabolite production

  • @ref: 120818
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
29682acid phosphatase+3.1.3.2
29682alkaline phosphatase+3.1.3.1
29682catalase+1.11.1.6
29682gelatinase+
29682cytochrome oxidase+1.9.3.1
29682urease+3.5.1.5
120818oxidase+
120818catalase+1.11.1.6
120818urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120818--++-+-----+--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17799seawaterPari Island (5.86° S 106.62° E)IndonesiaIDNAsia
120818Environment, SeawaterPari Island, JakartaIndonesiaIDNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_2264.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_306;96_1224;97_1450;98_1768;99_2264&stattab=map
  • Last taxonomy: Oleibacter marinus subclade
  • 16S sequence: AB435649
  • Sequence Identity:
  • Total samples: 5478
  • soil counts: 196
  • aquatic counts: 4827
  • animal counts: 376
  • plant counts: 79

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
177991Risk group (German classification)
1208181Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Oleibacter marinus gene for 16S rRNA, partial sequence, strain: NBRC 105760AB6822951458ena484498
17799Oleibacter marinus gene for 16S rRNA, partial sequence, strain: 2O1AB4356491455ena484498

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thalassolituus maritimus DSM 24913GCA_900156675scaffoldncbi484498
66792Oleibacter marinus strain DSM 24913484498.3wgspatric484498
66792Oleibacter marinus DSM 249132681813515draftimg484498

GC content

@refGC-contentmethod
1779953.0-53.1high performance liquid chromatography (HPLC)
2968253

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.683yes
flagellatedyes88.365no
gram-positiveno98.869yes
anaerobicno96.751yes
aerobicyes92.452yes
halophileyes82.228no
spore-formingno96.378no
thermophileno99.582yes
glucose-utilno54.127no
glucose-fermentno90.158no

External links

@ref: 17799

culture collection no.: DSM 24913, BTCC B-675, NBRC 105760, CIP 110300

straininfo link

  • @ref: 80531
  • straininfo: 376142

literature

  • topic: Phylogeny
  • Pubmed-ID: 20305063
  • title: Oleibacter marinus gen. nov., sp. nov., a bacterium that degrades petroleum aliphatic hydrocarbons in a tropical marine environment.
  • authors: Teramoto M, Ohuchi M, Hatmanti A, Darmayati Y, Widyastuti Y, Harayama S, Fukunaga Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.018671-0
  • year: 2010
  • mesh: Alkanes/*metabolism, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Genotype, Molecular Sequence Data, Oceanospirillaceae/*classification/genetics/isolation & purification, Petroleum/*metabolism, Phenotype, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Water Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17799Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24913)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24913
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
29682Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126067
40545Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8144
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80531Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID376142.1StrainInfo: A central database for resolving microbial strain identifiers
120818Curators of the CIPCollection of Institut Pasteur (CIP 110300)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110300