Name: Streptomonospora arabica S186
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11231

Type strain:

Species: Streptomonospora arabica

Strain Designation: S186

Culture col. no.: DSM 45083, CGMCC 4.2057, JCM 16007

Strain history: DSM 45083 <-- CGMCC 4.2057 <-- W. N. Hozzein S186.

NCBI tax ID(s): 412417 (species)

SI-ID 400481

DSM 45083

Section

Streptomonospora arabica S186 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sand-dune soil.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Nocardiopsidaceae*
	Genus	*Streptomonospora*
	Species	**Streptomonospora arabica**
	Full Scientific Name (LPSN)	Streptomonospora arabica corrig. (Hozzein and Goodfellow 2008) Zhang et al. 2013

Synonym

Nocardiopsis arabia

Information on morphological and physiological properties Morphology

[Ref.: #32128]	Gram stain	positive

[Ref.: #32128]	Cell length	0.7-1.5 µm

[Ref.: #32128]	Cell shape	rod-shaped

[Ref.: #32128]	Motility	no

[Ref.: #20163]	Incubation period	10-14 days
[Ref.: #20163]	Cultivation medium used	ISP 2

[Ref.: #20163]	Incubation period	10-14 days
[Ref.: #20163]	Cultivation medium used	ISP 3

[Ref.: #32128]

Pigment production

yes

[Ref.: #20163]	Multicellular complex forming ability	no
[Ref.: #20163]	Medium Name (multicellularity)	ISP 2

[Ref.: #20163]	Multicellular complex forming ability	no
[Ref.: #20163]	Medium Name (multicellularity)	ISP 3

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12325]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #12325]

Culture medium growth

[Ref.: #12325]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12325]

Culture medium composition

expand / minimize

[Ref.: #12325]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12325]

Culture medium growth

[Ref.: #12325]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12325]

Culture medium composition

expand / minimize

[Ref.: #20163]

Culture medium

ISP 2

[Ref.: #20163]

Culture medium growth

[Ref.: #20163]

Culture medium composition

expand / minimize

[Ref.: #20163]

Culture medium

ISP 3

[Ref.: #20163]

Culture medium growth

[Ref.: #20163]

Culture medium composition

expand / minimize

[Ref.: #12325]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #12325]

Culture medium growth

[Ref.: #12325]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12325]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12325]	growth	28 °C
[Ref.: #20163]	optimum	28 °C
[Ref.: #32128]	growth	10-40 °C
[Ref.: #32128]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #12325]	Temperature range	mesophilic
[Ref.: #20163]	Temperature range	mesophilic
[Ref.: #32128]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32128]			optimum	7
[Ref.: #32128]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32128]

Oxygen tolerance

aerobe

[Ref.: #32128]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32128]		NaCl		growth	0-15	%
[Ref.: #32128]		NaCl		optimum	5	%

[Ref.: #32128]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-10(H₄), MK-10(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32128]	arabinose ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32128]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #32128]	salicin ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #32128]	trehalose ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #20163]	455	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20163]	944	not determinedn.d.	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12325]	Sample type/isolated from	sand-dune soil
[Ref.: #12325]	Geographic location (country and/or sea, region)	Borg El-Arab
[Ref.: #12325]	Country	Egypt
[Ref.: #12325]	Country ISO 3 Code	EGY
[Ref.: #12325]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Sand-dune soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Borg El-Arab
[Ref.: #67770]	Country	Egypt
[Ref.: #67770]	Country ISO 3 Code	EGY
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF095149 (>99% sequence identity) for Streptomonospora from Microbeatlas

Aquatic Samples	1
Soil Samples	4
Animal Samples	1
Plant Samples
Total Samples	6

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12325]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12325]	Nocardiopsis arabia strain S186 16S ribosomal RNA gene, partial sequence	EF095149	1377	ENA	412417 tax ID

[Ref.: #12325]

GC-content

72.3 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #12325]

Culture collection no.

DSM 45083, CGMCC 4.2057, JCM 16007

[Ref.: #80466]

SI-ID 400481

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Streptomonospora sediminis sp. nov. and Streptomonospora nanhaiensis sp. nov., and reclassification of Nocardiopsis arabia Hozzein & Goodfellow 2008 as Streptomonospora arabica comb. nov. and emended description of the genus Streptomonospora.	Zhang DF, Pan HQ, He J, Zhang XM, Zhang YG, Klenk HP, Hu JC, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.052704-0	2013	*
Phylogeny	Salinactinospora qingdaonensis gen. nov., sp. nov., a halophilic actinomycete isolated from a salt pond.	Chang X, Liu W, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.031088-0	2011	*
Phylogeny	Nocardiopsis arabia sp. nov., a halotolerant actinomycete isolated from a sand-dune soil.	Hozzein WN, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.65014-0	2008	*

References

#12325

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45083

#20163

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32128

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28372 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80466

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400481.1 )

#28372

IJSEM 2520 2008 ( DOI 10.1099/ijs.0.65014-0 , PubMed 18984686 )

* These data were automatically processed and therefore are not curated

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