Name: Nocardiopsis rhodophaea DSM 44843
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11221

Type strain:

Species: Nocardiopsis rhodophaea

Culture col. no.: DSM 44843, CCTCC AA 2040014, CIP 109295, KCTC 19049, YIM 90096, JCM 15313

Strain history: <- WJ Li, Yunnan Univ.

NCBI tax ID(s): 280238 (species)

SI-ID 134263

DSM 44843, KCTC 19049, CIP 109295, JCM 15313

Special Collections

Section

Nocardiopsis rhodophaea DSM 44843 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from hypersaline soil.

Gram-positive
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Nocardiopsidaceae*
	Genus	*Nocardiopsis*
	Species	**Nocardiopsis rhodophaea**
	Full Scientific Name (LPSN)	Nocardiopsis rhodophaea Li et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31676]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #31676]	Cell shape	rod-shaped

[Ref.: #31676]	Motility	no

[Ref.: #20131]	Colony color	Rapeseed yellow (1021)
[Ref.: #20131]	Incubation period	10-14 days
[Ref.: #20131]	Cultivation medium used	ISP 2

[Ref.: #20131]	Colony color	Zinc yellow (1018)
[Ref.: #20131]	Incubation period	10-14 days
[Ref.: #20131]	Cultivation medium used	ISP 3

[Ref.: #20131]	Colony color	Cream (9001)
[Ref.: #20131]	Incubation period	10-14 days
[Ref.: #20131]	Cultivation medium used	ISP 4

[Ref.: #20131]	Colony color	Cream (9001)
[Ref.: #20131]	Incubation period	10-14 days
[Ref.: #20131]	Cultivation medium used	ISP 5

[Ref.: #20131]	Colony color	Pastel orange (2003)
[Ref.: #20131]	Incubation period	10-14 days
[Ref.: #20131]	Cultivation medium used	ISP 6

[Ref.: #20131]	Colony color	Cream (9001)
[Ref.: #20131]	Incubation period	10-14 days
[Ref.: #20131]	Cultivation medium used	ISP 7

[Ref.: #31676]

Pigment production

yes

[Ref.: #20131]	Multicellular complex forming ability	no
[Ref.: #20131]	Medium Name (multicellularity)	ISP 2

[Ref.: #20131]	Multicellular complex forming ability	no
[Ref.: #20131]	Medium Name (multicellularity)	ISP 3

[Ref.: #20131]	Multicellular complex forming ability	no
[Ref.: #20131]	Medium Name (multicellularity)	ISP 4

[Ref.: #20131]	Multicellular complex forming ability	no
[Ref.: #20131]	Medium Name (multicellularity)	ISP 5

[Ref.: #20131]	Multicellular complex forming ability	no
[Ref.: #20131]	Medium Name (multicellularity)	ISP 6

[Ref.: #20131]	Multicellular complex forming ability	no
[Ref.: #20131]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12024]

Culture medium

TCG MEDIUM (DSMZ Medium 1009)

[Ref.: #12024]

Culture medium growth

[Ref.: #12024]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12024]

Culture medium composition

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #12024]

Culture medium growth

[Ref.: #12024]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12024]

Culture medium composition

expand / minimize

[Ref.: #20131]

Culture medium

ISP 2

[Ref.: #20131]

Culture medium growth

[Ref.: #20131]

Culture medium composition

expand / minimize

[Ref.: #20131]

Culture medium

ISP 3

[Ref.: #20131]

Culture medium growth

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Culture medium composition

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[Ref.: #20131]

Culture medium

ISP 4

[Ref.: #20131]

Culture medium growth

[Ref.: #20131]

Culture medium composition

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[Ref.: #20131]

Culture medium

ISP 5

[Ref.: #20131]

Culture medium growth

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Culture medium composition

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[Ref.: #20131]

Culture medium

ISP 6

[Ref.: #20131]

Culture medium growth

[Ref.: #20131]

Culture medium composition

expand / minimize

[Ref.: #20131]

Culture medium

ISP 7

[Ref.: #20131]

Culture medium growth

[Ref.: #20131]

Culture medium composition

expand / minimize

[Ref.: #12024]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #12024]

Culture medium growth

[Ref.: #12024]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12024]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12024]	growth	28 °C
[Ref.: #20131]	optimum	28 °C
[Ref.: #31676]	growth	20-60 °C
[Ref.: #31676]	optimum	37-40 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #31676]			optimum	7.2
[Ref.: #31676]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31676]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31676]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31676]		NaCl		growth	0-18	%
[Ref.: #31676]		NaCl		optimum	05-08	%

[Ref.: #31676]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-11(H₆), MK-11(H₈)
[Ref.: #67771]	Observation	quinones: MK-11(H6), MK-11(H8)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31676]	arabinose ChEBI	+	carbon source
[Ref.: #31676]	glucose ChEBI	+	carbon source
[Ref.: #31676]	glycerol ChEBI	+	carbon source
[Ref.: #31676]	ribose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20131]	912	not determinedn.d.	+	+	-	-	+	-	-	-	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12024]	Sample type/isolated from	hypersaline soil
[Ref.: #12024]	Geographic location (country and/or sea, region)	Xin Jiang Province
[Ref.: #12024]	Country	China
[Ref.: #12024]	Country ISO 3 Code	CHN
[Ref.: #12024]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Saline soil
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	hypersaline soils in Xinjiang province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY619714 (>99% sequence identity) for Nocardiopsis rhodophaea subclade from Microbeatlas

Aquatic Samples
Soil Samples	2
Animal Samples
Plant Samples
Total Samples	2

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12024]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20131]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12024]	Nocardiopsis rhodophaea 16S ribosomal RNA gene, partial sequence	AY619714	1490	GenBank ENA	280238 tax ID

[Ref.: #12024]	GC-content	69.0 mol%
[Ref.: #31676]	GC-content	69 mol%
[Ref.: #67770]	GC-content	69 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67771]	GC-content	69.0 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #12024]

Culture collection no.

DSM 44843, CCTCC AA 2040014, CIP 109295, KCTC 19049, YIM 90096, JCM 15313

[Ref.: #80464]

SI-ID 134263

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardiopsis akesuensis sp. nov., an actinomycete isolated from a salt water beach.	Gao GB, Luo XX, Xia ZF, Zhang Y, Wan CX, Zhang LL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001460	2016	*
Phylogeny	Five novel species of the genus Nocardiopsis isolated from hypersaline soils and emended description of Nocardiopsis salina Li et al. 2004.	Li WJ, Kroppenstedt RM, Wang D, Tang SK, Lee JC, Park DJ, Kim CJ, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.64033-0	2006	*

References

#12024

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44843

#20131

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31676

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27954 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80464

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134263.1 )

#27954

IJSEM 1089 2006 ( DOI 10.1099/ijs.0.64033-0 , PubMed 16627660 )

* These data were automatically processed and therefore are not curated

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