Name: Nocardioides ultimimeridianus RP-B26
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11127

Type strain:

Species: Nocardioides ultimimeridianus

Strain Designation: RP-B26

Culture col. no.: DSM 19768, JCM 31981, KCTC 19368

Strain history: <- SD Lee, Cheju Univ.

NCBI tax ID(s): 598609 (species)

SI-ID 406317

DSM 19768

Special Collections

Section

When using BacDive for research please cite our paper

Nocardioides ultimimeridianus RP-B26 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from rhizosphere soil of Peucedanum japonicum Thunb..

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides ultimimeridianus**
	Full Scientific Name (LPSN)	Nocardioides ultimimeridianus Lee et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #69218]	Colony color	Ivory (1014)
[Ref.: #69218]	Cultivation medium used	ISP 7

[Ref.: #69218]	Colony color	Light ivory (1015)
[Ref.: #69218]	Cultivation medium used	ISP 4

[Ref.: #69218]	Colony color	Light ivory (1015)
[Ref.: #69218]	Cultivation medium used	ISP 6

[Ref.: #69218]	Colony color	Pastel yellow (1034)
[Ref.: #69218]	Cultivation medium used	suter with tyrosine

[Ref.: #69218]	Colony color	Pastel yellow (1034)
[Ref.: #69218]	Cultivation medium used	suter without tyrosine

[Ref.: #69218]	Colony color	Rape yellow (1021)
[Ref.: #69218]	Cultivation medium used	ISP 2

[Ref.: #69218]	Colony color	Zinc yellow (1018)
[Ref.: #69218]	Cultivation medium used	ISP 5

[Ref.: #69218]	Pigment production	no
[Ref.: #69218]	Pigment name	Melanin
[Ref.: #69218]	Pigment production	no
[Ref.: #69218]	Pigment name	soluble pigment

[Ref.: #69218]	Multicellular complex forming ability	no
[Ref.: #69218]	Multicellular complex name	Aerial mycelium
[Ref.: #69218]	Medium Name (multicellularity)	ISP 2

[Ref.: #69218]	Multicellular complex forming ability	no
[Ref.: #69218]	Multicellular complex name	Aerial mycelium
[Ref.: #69218]	Medium Name (multicellularity)	ISP 4

[Ref.: #69218]	Multicellular complex forming ability	no
[Ref.: #69218]	Multicellular complex name	Aerial mycelium
[Ref.: #69218]	Medium Name (multicellularity)	ISP 5

[Ref.: #69218]	Multicellular complex forming ability	no
[Ref.: #69218]	Multicellular complex name	Aerial mycelium
[Ref.: #69218]	Medium Name (multicellularity)	ISP 6

[Ref.: #69218]	Multicellular complex forming ability	no
[Ref.: #69218]	Multicellular complex name	Aerial mycelium
[Ref.: #69218]	Medium Name (multicellularity)	ISP 7

[Ref.: #69218]	Multicellular complex forming ability	no
[Ref.: #69218]	Multicellular complex name	Aerial mycelium
[Ref.: #69218]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69218]	Multicellular complex forming ability	no
[Ref.: #69218]	Multicellular complex name	Aerial mycelium
[Ref.: #69218]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69218]

Caption:

Plates (GYM, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69218]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69218]

Caption:

Plates (GYM, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69218]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8305]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #8305]

Culture medium growth

[Ref.: #8305]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8305]

Culture medium composition

expand / minimize

[Ref.: #8305]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #8305]

Culture medium growth

[Ref.: #8305]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8305]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8305]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69218]		NaCl		growth	0-5	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69218]	arabinose ChEBI	-	growth
[Ref.: #69218]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69218]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69218]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69218]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69218]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69218]	raffinose ChEBI	-	growth
[Ref.: #69218]	rhamnose ChEBI	-	growth
[Ref.: #69218]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69218]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69218]	3712	-	-	-	-	-	-	+	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69218]	5896	not determinedn.d.	+/-	+/-	+	+/-	+	+/-	+/-	-	-	+	+/-	-	-	-	+	+/-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8305]	Sample type/isolated from	rhizosphere soil of Peucedanum japonicum Thunb.
[Ref.: #8305]	Host species	Peucedanum japonicum
[Ref.: #8305]	Geographic location (country and/or sea, region)	Jeju, Mara Island
[Ref.: #8305]	Country	Republic of Korea
[Ref.: #8305]	Country ISO 3 Code	KOR
[Ref.: #8305]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil of a cliff-associated plant (_n(Peucedanum japonicum) Thunb.) on Mara Island
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From rhizosphere of plant
[Ref.: #67771]	Geographic location (country and/or sea, region)	Mara island, Jeju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8305]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8305]	Nocardioides sp. RP-B26 partial 16S rRNA gene, strain RP-B26	FM997998	1402	GenBank ENA	598609 tax ID

[Ref.: #8305]	GC-content	73.0 mol%
[Ref.: #67770]	GC-content	73 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #8305]

Culture collection no.

DSM 19768, JCM 31981, KCTC 19368

[Ref.: #80376]

SI-ID 406317

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides daecheongensis sp. nov., isolated from soil.	Lim JM, Kim SJ, Hamada M, Ahn JH, Weon HY, Suzuki KI, Ahn TY, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.063610-0	2014	*
Phylogeny	Nocardioides ultimimeridianus sp. nov. and Nocardioides maradonensis sp. nov., isolated from rhizosphere soil.	Lee DW, Lee SY, Yoon JH, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.022715-0	2010	*

References

#8305

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19768

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69218

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#80376

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406317.1 )

* These data were automatically processed and therefore are not curated

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