Nocardioides ultimimeridianus (DSM 19768, JCM 31981, KCTC 19368)

Name: Nocardioides ultimimeridianus (DSM 19768, JCM 31981, KCTC 19368)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11127

Type strain

Strain Designation RP-B26

Culture col. no. DSM 19768 JCM 31981 KCTC 19368 RP-B26

NCBI tax ID(s) 598609

Special Collections DSMZ JCM KCTC Wink compendium

History <- S. D. Lee, Jeju National Univ., Rep. of Korea; RP-B26 DSM 19768 <-- S. D. Lee; Jeju Natl. Univ., South Korea; RP-B26. <- SD Lee, Cheju Univ.

Links

Nocardioides ultimimeridianus RP-B26 is an aerobe, Gram-positive bacterium that was isolated from rhizosphere soil of Peucedanum japonicum Thunb..

Gram-positive aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406317

KCTC 19368,JCM 31981,DSM 19768

@ref 20215

Last LPSN update 2026-02-09 11:20:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides ultimimeridianus

Full scientific name Nocardioides ultimimeridianus Lee et al. 2011

Morphology

Cell morphology

67771

Gram stainpositive

Colony morphology

@ref	Colony color	Medium used
69218	Ivory (1014)	ISP 7
69218	Light ivory (1015)	ISP 4
69218	Light ivory (1015)	ISP 6
69218	Pastel yellow (1034)	suter with tyrosine
69218	Pastel yellow (1034)	suter without tyrosine
69218	Rape yellow (1021)	ISP 2
69218	Zinc yellow (1018)	ISP 5

Multicellular morphology

@ref	Complex name	Medium name
69218	Aerial mycelium	ISP 2
69218	Aerial mycelium	ISP 4
69218	Aerial mycelium	ISP 5
69218	Aerial mycelium	ISP 6
69218	Aerial mycelium	ISP 7
69218	Aerial mycelium	suter with tyrosine
69218	Aerial mycelium	suter without tyrosine

Pigmentation

@ref	Production	Name
69218		melanin pigment
69218		soluble pigment

Multimedia

@ref:	69218
multimedia content:	DSM_19768_image3.jpeg
multimedia.multimedia content:	DSM_19768_image3.jpeg
caption:	Plates (GYM, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69218
multimedia content:	DSM_19768_image4.jpeg
multimedia.multimedia content:	DSM_19768_image4.jpeg
caption:	Plates (GYM, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8305	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
8305	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8305	positive	growth	28
67770	positive	growth	28
67771	positive	growth	30

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69218	NaCl	positive	growth	0-5 %

Observation

67770

Observationquinones: MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69218	22599 ChEBI	arabinose	-	growth
69218	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69218	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
69218	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69218	17268 ChEBI	inositol	-	growth
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69218	37684 ChEBI	mannose	-	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69218	16634 ChEBI	raffinose	-	growth
69218	26546 ChEBI	rhamnose	-	growth
69218	17992 ChEBI	sucrose	+	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69218	18222 ChEBI	xylose	-	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69218	-	-	-	-	-	-	+	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69218	not determinedn.d.	+/-	+/-	+	+/-	+	+/-	+/-	-	-	+	+/-	-	-	-	+	+/-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
8305	rhizosphere soil of Peucedanum japonicum Thunb.	Peucedanum japonicum	Jeju, Mara Island	Republic of Korea	KOR	Asia
67770	Rhizosphere soil of a cliff-associated plant (_n(Peucedanum japonicum) Thunb.) on Mara Island		Jeju	Republic of Korea	KOR	Asia
67771	From rhizosphere of plant		Mara island, Jeju	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8305	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8305	Nocardioides sp. RP-B26 partial 16S rRNA gene, strain RP-B26	FM997998	1402		598609

GC content

@ref	GC-content (mol%)	Method
8305	73.0
67770	73	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides daecheongensis sp. nov., isolated from soil.	Lim JM, Kim SJ, Hamada M, Ahn JH, Weon HY, Suzuki KI, Ahn TY, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.063610-0	2014
Phylogeny	Nocardioides ultimimeridianus sp. nov. and Nocardioides maradonensis sp. nov., isolated from rhizosphere soil.	Lee DW, Lee SY, Yoon JH, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.022715-0	2010

References

#8305	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19768
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69218	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardioides ultimimeridianus (DSM 19768, JCM 31981, KCTC 19368)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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