Name: Kribbella solani DSA1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11072

Type strain:

Species: Kribbella solani

Strain Designation: DSA1

Culture col. no.: DSM 17294, CIP 108508, JCM 12205, KACC 20196, NBRC 101071

Strain history: CIP <- 2004, JCM <- 2004, J. Song, Korea: strain DSA1

NCBI tax ID(s): 236067 (species)

SI-ID 132782

JCM 12205, KACC 20196, NBRC 101071, CIP 108508, DSM 17294

Special Collections

Section

Kribbella solani DSA1 is an obligate aerobe, rod-shaped bacterium that was isolated from potato, tuber with scab lesions.

rod-shaped
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Kribbellaceae*
	Genus	*Kribbella*
	Species	**Kribbella solani**
	Full Scientific Name (LPSN)	Kribbella solani Song et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #122652]	Gram stain	negative

[Ref.: #122652]	Cell shape	rod-shaped
[Ref.: #30112]	Cell shape	rod-shaped

[Ref.: #122652]	Motility	no
[Ref.: #30112]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6879]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #6879]

Culture medium growth

[Ref.: #6879]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6879]

Culture medium composition

expand / minimize

[Ref.: #33246]

Culture medium

MEDIUM 122 - for Streptomyces

[Ref.: #33246]

Culture medium growth

[Ref.: #33246]

Culture medium composition

expand / minimize

[Ref.: #6879]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #6879]

Culture medium growth

[Ref.: #6879]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6879]

Culture medium composition

expand / minimize

[Ref.: #122652]

Culture medium

CIP Medium 122

[Ref.: #122652]

Culture medium growth

[Ref.: #122652]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6879]		growth	28 °C
[Ref.: #30112]		growth	28-30 °C
[Ref.: #30112]		optimum	29 °C
[Ref.: #33246]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #122652]	no	growth	41 °C
[Ref.: #122652]	no	growth	37 °C
[Ref.: #122652]	no	growth	10 °C
[Ref.: #122652]		growth	25-30 °C
[Ref.: #122652]	no	growth	45 °C

	pH	Kind of pH		pH
[Ref.: #30112]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122652]	Oxygen tolerance	obligate aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %92.626

	Salt	Tested relation		Salt conc.
[Ref.: #30112]	NaCl		growth	2	%
[Ref.: #122652]	NaCl		growth	0	%
[Ref.: #122652]	NaCl	no	growth	2	%
[Ref.: #122652]	NaCl	no	growth	4	%
[Ref.: #122652]	NaCl	no	growth	6	%
[Ref.: #122652]	NaCl	no	growth	8	%
[Ref.: #122652]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30112]	arabinose ChEBI	+	carbon source
[Ref.: #30112]	cellobiose ChEBI	+	carbon source
[Ref.: #122652]	citrate ChEBI	-	carbon source
[Ref.: #30112]	esculin ChEBI	+	hydrolysis
[Ref.: #122652]	esculin ChEBI	+	hydrolysis
[Ref.: #30112]	glucose ChEBI	+	carbon source
[Ref.: #122652]	hippurate ChEBI	-	hydrolysis
[Ref.: #30112]	lactose ChEBI	+	carbon source
[Ref.: #30112]	mannose ChEBI	+	carbon source
[Ref.: #30112]	melibiose ChEBI	+	carbon source
[Ref.: #122652]	nitrate ChEBI	-	reduction
[Ref.: #122652]	nitrate ChEBI	-	respiration
[Ref.: #122652]	nitrite ChEBI	-	reduction
[Ref.: #30112]	raffinose ChEBI	+	carbon source
[Ref.: #30112]	rhamnose ChEBI	+	carbon source
[Ref.: #30112]	salicin ChEBI	+	carbon source
[Ref.: #30112]	sucrose ChEBI	+	carbon source
[Ref.: #30112]	trehalose ChEBI	+	carbon source
[Ref.: #30112]	tween 80 ChEBI	+	carbon source
[Ref.: #30112]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122652]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #122652]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122652]		acetoin ChEBI	-
[Ref.: #122652]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122652]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #122652]	amylase	+
[Ref.: #122652]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122652]	caseinase	+	3.4.21.50
[Ref.: #30112]	catalase	+	1.11.1.6
[Ref.: #122652]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #122652]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122652]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #122652]	gelatinase	+
[Ref.: #122652]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122652]	lipase	+
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #122652]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122652]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122652]	oxidase	+
[Ref.: #122652]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #122652]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122652]	tryptophan deaminase	-
[Ref.: #122652]	tween esterase	+
[Ref.: #122652]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122652]	2780	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	-	+	+	+	+	+	-	-	-	-	+	-	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	+	+	-	-	-	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122652]	11240	-	+	+	+	+	+	-	-	-	-	+	+	-	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6879]	Sample type/isolated from	potato, tuber with scab lesions
[Ref.: #6879]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #6879]	Country	Republic of Korea
[Ref.: #6879]	Country ISO 3 Code	KOR
[Ref.: #6879]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Potato tuber with scab lesions
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #122652]	Sample type/isolated from	Plant, Potato tuber with scab lesions
[Ref.: #122652]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #122652]	Country	Republic of Korea
[Ref.: #122652]	Country ISO 3 Code	KOR
[Ref.: #122652]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC113903 (>99% sequence identity) for Kribbella from Microbeatlas

Aquatic Samples
Soil Samples	35
Animal Samples	7
Plant Samples	38
Total Samples	80

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6879]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122652]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kribbella solani gene for 16S ribosomal RNA, partial sequence, strain: JCM 12205	LC113903	1467	GenBank ENA	236067 tax ID
[Ref.: #6879]	Kribbella sp. DSA1 16S ribosomal RNA gene, partial sequence	AY253862	1516	GenBank ENA	236067 tax ID
[Ref.: #20218]	Kribbella solani strain YB2 16S ribosomal RNA gene, partial sequence	EF623891	1470	GenBank ENA	236067 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kribbella solani DSM 17294	GCA_014205295	contig	GenBank ENA	236067 tax ID	*
[Ref.: #66792]	Kribbella solani strain DSM 17294	236067.3	wgs	PATRIC	236067 tax ID	*
[Ref.: #66792]	Kribbella solani DSM 17294	2873330523	draft	JGI IMG/M	236067 tax ID	*

[Ref.: #6879]	GC-content	69 mol%
[Ref.: #67770]	GC-content	69.2 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kribbella solani strain DSM 17294 PATRIC: 236067.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.649	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.403	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	83.804	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	92.626	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.5	yes

Availability in culture collections External links

[Ref.: #6879]

Culture collection no.

DSM 17294, CIP 108508, JCM 12205, KACC 20196, NBRC 101071

[Ref.: #80321]

SI-ID 132782

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kribbella solani sp. nov. and Kribbella jejuensis sp. nov., isolated from potato tuber and soil in Jeju, Korea.	Song J, Kim BY, Hong SB, Cho HS, Sohn K, Chun J, Suh JW	Int J Syst Evol Microbiol	10.1099/ijs.0.02953-0	2004	*

References

#6879

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17294

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#30112

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26467 (see below)

#33246 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80321

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132782.1 )

#122652 Collection of Institut Pasteur ; Curators of the CIP; CIP 108508

#26467

IJSEM 1345 2004 ( DOI 10.1099/ijs.0.02953-0 , PubMed 15280312 )

* These data were automatically processed and therefore are not curated

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Kribbella solani strain DSM 17294

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