Name: Kribbella jejuensis HD9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11073

Type strain:

Species: Kribbella jejuensis

Strain Designation: HD9

Culture col. no.: DSM 17305, CIP 108509, JCM 12204, KACC 20266, NBRC 101070

Strain history: CIP <- 2004, JCM <- 2003, J. Song, Suwon, Korea: strain HD9

NCBI tax ID(s): 236068 (species)

SI-ID 132781

JCM 12204, KACC 20266, NBRC 101070, CIP 108509, DSM 17305

Other strains from Kribbella jejuensis

K. jejuensis SF001414(FSU),
K. jejuensis SF001447(FSU),
K. jejuensis SF001472(FSU), NRRL 1989
K. jejuensis SF001927(FSU),
K. jejuensis SF001928(FSU),
K. jejuensis SF004544(FSU),
K. jejuensis SF006216(FSU),

Section

Kribbella jejuensis HD9 is an obligate aerobe, mesophilic, rod-shaped bacterium that was isolated from soil.

rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Kribbellaceae*
	Genus	*Kribbella*
	Species	**Kribbella jejuensis**
	Full Scientific Name (LPSN)	Kribbella jejuensis Song et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #120326]	Gram stain	negative

[Ref.: #120326]	Cell shape	rod-shaped
[Ref.: #30112]	Cell shape	rod-shaped

[Ref.: #120326]	Motility	no
[Ref.: #30112]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36401]

Culture medium

MEDIUM 122 - for Streptomyces

[Ref.: #36401]

Culture medium growth

[Ref.: #36401]

Culture medium composition

expand / minimize

[Ref.: #6887]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #6887]

Culture medium growth

[Ref.: #6887]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6887]

Culture medium composition

expand / minimize

[Ref.: #6887]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #6887]

Culture medium growth

[Ref.: #6887]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6887]

Culture medium composition

expand / minimize

[Ref.: #120326]

Culture medium

CIP Medium 122

[Ref.: #120326]

Culture medium growth

[Ref.: #120326]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6887]		growth	28 °C
[Ref.: #30112]		growth	28-37 °C
[Ref.: #30112]		optimum	22.5 °C
[Ref.: #36401]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #120326]		growth	25-37 °C
[Ref.: #120326]	no	growth	10 °C
[Ref.: #120326]	no	growth	41 °C
[Ref.: #120326]	no	growth	45 °C

[Ref.: #6887]	Temperature range	mesophilic
[Ref.: #30112]	Temperature range	mesophilic
[Ref.: #30112]	Temperature range	psychrophilic
[Ref.: #36401]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #120326]	Temperature range	mesophilic
[Ref.: #120326]	Temperature range	psychrophilic
[Ref.: #120326]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #30112]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #120326]

Oxygen tolerance

obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #30112]	NaCl		growth	1	%
[Ref.: #120326]	NaCl		growth	0-4	%
[Ref.: #120326]	NaCl	no	growth	6	%
[Ref.: #120326]	NaCl	no	growth	8	%
[Ref.: #120326]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30112]	arabinose ChEBI	+	carbon source
[Ref.: #30112]	cellobiose ChEBI	+	carbon source
[Ref.: #120326]	citrate ChEBI	-	carbon source
[Ref.: #30112]	esculin ChEBI	+	hydrolysis
[Ref.: #120326]	esculin ChEBI	-	hydrolysis
[Ref.: #30112]	galactose ChEBI	+	carbon source
[Ref.: #30112]	glucose ChEBI	+	carbon source
[Ref.: #120326]	hippurate ChEBI	+	hydrolysis
[Ref.: #30112]	lactose ChEBI	+	carbon source
[Ref.: #30112]	melibiose ChEBI	+	carbon source
[Ref.: #120326]	nitrate ChEBI	-	reduction
[Ref.: #120326]	nitrate ChEBI	-	respiration
[Ref.: #120326]	nitrite ChEBI	-	reduction
[Ref.: #30112]	raffinose ChEBI	+	carbon source
[Ref.: #30112]	rhamnose ChEBI	+	carbon source
[Ref.: #30112]	sucrose ChEBI	+	carbon source
[Ref.: #30112]	trehalose ChEBI	+	carbon source
[Ref.: #30112]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120326]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #120326]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120326]		acetoin ChEBI	-
[Ref.: #120326]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120326]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #120326]	amylase	-
[Ref.: #120326]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120326]	caseinase	+	3.4.21.50
[Ref.: #30112]	catalase	+	1.11.1.6
[Ref.: #120326]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #120326]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120326]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #30112]	gelatinase	+
[Ref.: #120326]	gelatinase	+
[Ref.: #120326]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120326]	lipase	+
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #120326]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120326]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120326]	oxidase	-
[Ref.: #120326]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #120326]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120326]	tryptophan deaminase	-
[Ref.: #120326]	tween esterase	-
[Ref.: #30112]	urease	+	3.5.1.5
[Ref.: #120326]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120326]	2781	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	-	-	-	+	+	+	-	-	-	-	-	+	+	+	+	+	-	-	-	-	+	-	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	-	+	-	+	+	-	-	+	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120326]	11241	-	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6887]	Sample type/isolated from	soil
[Ref.: #6887]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #6887]	Country	Republic of Korea
[Ref.: #6887]	Country ISO 3 Code	KOR
[Ref.: #6887]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil of potato-cultivationg field
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #120326]	Sample type/isolated from	Environment, Soil of potato-cultivating field
[Ref.: #120326]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #120326]	Country	Republic of Korea
[Ref.: #120326]	Country ISO 3 Code	KOR
[Ref.: #120326]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6887]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120326]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6887]	Kribbella sp. HD9 16S ribosomal RNA gene, partial sequence	AY253866	1517	ENA	236068 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kribbella jejuensis DSM 17305	GCA_006715085	contig	GenBank	236068 tax ID
[Ref.: #66792]	Kribbella jejuensis strain DSM 17305	236068.3	wgs	PATRIC	236068 tax ID	*
[Ref.: #66792]	Kribbella jejuensis DSM 17305	2806310635	draft	JGI IMG/M	236068 tax ID	*

[Ref.: #6887]	GC-content	68 mol%
[Ref.: #67770]	GC-content	67-69 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kribbella jejuensis strain DSM 17305 PATRIC: 236068.3
[Ref.: #69480]	motile	no	93.014	no
[Ref.: #69480]	gram-positive	yes	89.057	no
[Ref.: #69480]	anaerobic	no	99.283	no
[Ref.: #69480]	aerobic	yes	93.459	no
[Ref.: #69480]	halophile	no	96.188	yes
[Ref.: #69480]	spore-forming	yes	82.546	no
[Ref.: #69480]	glucose-util	yes	88.933	yes
[Ref.: #69480]	flagellated	no	97.937	yes
[Ref.: #69480]	thermophile	no	98.398	yes
[Ref.: #69480]	glucose-ferment	no	87.982	no

Availability in culture collections External links

[Ref.: #6887]

Culture collection no.

DSM 17305, CIP 108509, JCM 12204, KACC 20266, NBRC 101070

[Ref.: #80322]

SI-ID 132781

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kribbella soli sp. nov., isolated from soil.	Ozdemir-Kocak F, Saygin H, Saricaoglu S, Cetin D, Guven K, Sproer C, Schumann P, Klenk HP, Sahin N, Isik K	Antonie Van Leeuwenhoek	10.1007/s10482-017-0830-x	2017	*
Phylogeny	Kribbella solani sp. nov. and Kribbella jejuensis sp. nov., isolated from potato tuber and soil in Jeju, Korea.	Song J, Kim BY, Hong SB, Cho HS, Sohn K, Chun J, Suh JW	Int J Syst Evol Microbiol	10.1099/ijs.0.02953-0	2004	*

References

#6887

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17305

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30112

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26467 (see below)

#36401 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80322

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132781.1 )

#120326 Collection of Institut Pasteur ; Curators of the CIP; CIP 108509

#26467

IJSEM 1345 2004 ( DOI 10.1099/ijs.0.02953-0 , PubMed 15280312 )

* These data were automatically processed and therefore are not curated

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Kribbella jejuensis strain DSM 17305

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