Name: Ilumatobacter fluminis YM22-133
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 110

Type strain:

Species: Ilumatobacter fluminis

Strain Designation: YM22-133

Culture col. no.: DSM 18936, JCM 17811, MBIC 08263

Strain history: DSM 18936 <-- MBIC 08263 <-- Y. Matsuo YM22-133.

NCBI tax ID(s): 467091 (species)

SI-ID 404734

DSM 18936

Section

Ilumatobacter fluminis YM22-133 is a mesophilic bacterium that was isolated from sediment.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Acidimicrobiia*
	Order	*Acidimicrobiales*
	Family	*Ilumatobacteraceae*
	Genus	*Ilumatobacter*
	Species	**Ilumatobacter fluminis**
	Full Scientific Name (LPSN)	Ilumatobacter fluminis Matsumoto et al. 2009

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7794]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7794]

Culture medium growth

[Ref.: #7794]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7794]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7794]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #7794]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-9(H₈)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7794]	Sample type/isolated from	sediment
[Ref.: #7794]	Geographic location (country and/or sea, region)	Okinawa Prefecture, Iriomote, mouth of Kuiragawa River (N 24°19'23.9", E 123°44'44.7")
[Ref.: #7794]	Country	Japan
[Ref.: #7794]	Country ISO 3 Code	JPN
[Ref.: #7794]	Continent	Asia
[Ref.: #7794]	Geographic location	24.3233°/123.7460°

[Ref.: #67770]	Sample type/isolated from	Sediment at the mouth of the Kuiragawa River
[Ref.: #67770]	Geographic location (country and/or sea, region)	Iriomote, Okinawa Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB360343 (>99% sequence identity) for Ilumatobacter fluminis subclade from Microbeatlas

Aquatic Samples	927
Soil Samples	14
Animal Samples	5
Plant Samples	2
Total Samples	948

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7794]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7794]	Ilumatobacter fluminis gene for 16S rRNA, partial sequence	AB360343	1439	ENA	1331058 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Ilumatobacter fluminis DSM 18936	GCA_004364865	contig	GenBank	467091 tax ID
[Ref.: #66792]	Ilumatobacter fluminis strain DSM 18936	467091.3	wgs	PATRIC	467091 tax ID	*
[Ref.: #66792]	Ilumatobacter fluminis DSM 18936	2772190982	draft	JGI IMG/M	467091 tax ID	*

[Ref.: #7794]	GC-content	68 mol%
[Ref.: #67770]	GC-content	68 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ilumatobacter fluminis strain DSM 18936 PATRIC: 467091.3
[Ref.: #69480]	gram-positive	yes	69.725	no
[Ref.: #69480]	anaerobic	no	98.788	no
[Ref.: #69480]	halophile	no	86.44	no
[Ref.: #69480]	spore-forming	no	85.361	no
[Ref.: #69480]	glucose-util	yes	82.702	no
[Ref.: #69480]	aerobic	yes	91.041	no
[Ref.: #69480]	flagellated	no	98.314	no
[Ref.: #69480]	thermophile	no	98.225	no
[Ref.: #69480]	motile	no	93.995	no
[Ref.: #69480]	glucose-ferment	no	93.168	no

Availability in culture collections External links

[Ref.: #7794]

Culture collection no.

DSM 18936, JCM 17811, MBIC 08263

[Ref.: #69793]

SI-ID 404734

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Ilumatobacter coccineum YM16-304(T.).	Fujinami S, Takarada H, Kasai H, Sekine M, Omata S, Harada T, Fukai R, Hosoyama A, Horikawa H, Kato Y, Nakazawa H, Fujita N	Stand Genomic Sci	10.4056/sigs.4007734	2013	*
Phylogeny	Ilumatobacter nonamiense sp. nov. and Ilumatobacter coccineum sp. nov., isolated from seashore sand.	Matsumoto A, Kasai H, Matsuo Y, Shizuri Y, Ichikawa N, Fujita N, Omura S, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.047316-0	2013	*
Phylogeny	Ilumatobacter fluminis gen. nov., sp. nov., a novel actinobacterium isolated from the sediment of an estuary.	Matsumoto A, Kasai H, Matsuo Y, Omura S, Shizuri Y, Takahashi Y	J Gen Appl Microbiol	10.2323/jgam.55.201	2009	*

References

#7794

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18936

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69793

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404734.1 )

* These data were automatically processed and therefore are not curated

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Ilumatobacter fluminis strain DSM 18936

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