Ilumatobacter fluminis (DSM 18936, JCM 17811, MBIC 08263)

Name: Ilumatobacter fluminis (DSM 18936, JCM 17811, MBIC 08263)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 110

Type strain

Strain Designation YM22-133

Culture col. no. DSM 18936 JCM 17811 MBIC 08263 YM22-133

NCBI tax ID(s) 467091

Special Collections DSMZ JCM

History DSMZ <- H. Kasai <- Y. Matsuo, Marine Biotechnol. Inst., Kamaishi, Japan; YM22-133 JCM <-- DSM 18936 <-- MBIC 08263 <-- Y. Matsuo YM22-133.

Links

Ilumatobacter fluminis YM22-133 is a bacterium that was isolated from sediment.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404734

JCM 17811,DSM 18936

@ref 20215

Last LPSN update 2026-05-29 08:24:57

Domain Bacteria

Phylum Actinomycetota

Class Acidimicrobiia

Order Acidimicrobiales

Family Ilumatobacteraceae

Genus Ilumatobacter

Species Ilumatobacter fluminis

Full scientific name Ilumatobacter fluminis Matsumoto et al. 2009

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		90.752
125439		98.15	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7794	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l Agar 15.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7794	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.342

Observation

67770

Observationquinones: MK-9(H₈)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
7794	sediment	Okinawa Prefecture, Iriomote, mouth of Kuiragawa River (N 24°19'23.9", E 123°44'44.7")	Japan	JPN	Asia	24.3233	123.746 24.3233/123.746
67770	Sediment at the mouth of the Kuiragawa River	Iriomote, Okinawa Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB360343 (>99% sequence identity) for Ilumatobacter fluminis subclade from Microbeatlas

Aquatic Samples	927
Soil Samples	14
Animal Samples	5
Plant Samples	2
Total Samples	948

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7794	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM436486v1 assembly for Ilumatobacter fluminis DSM 18936	contig	GCA_004364865	467091.3	2772190982	467091	76.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7794	Ilumatobacter fluminis gene for 16S rRNA, partial sequence	AB360343	1439		1331058

GC content

@ref	GC-content (mol%)	Method
7794	68
67770	68	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM436486v1 assembly for Ilumatobacter fluminis DSM 18936
NCBI: GCA_004364865

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.34	no
125439	gram_stain	BacteriaNetⓘ	positive	98.15	no
125439	motility	BacteriaNetⓘ	no	90.75	no
125439	spore_formation	BacteriaNetⓘ	yes	34.85	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ilumatobacter fluminis strain DSM 18936
PATRIC: 467091.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	76.81	no
125438	anaerobic	anaerobicⓘ	no	85.39	no
125438	spore-forming	spore-formingⓘ	no	57.91	no
125438	thermophilic	thermophileⓘ	no	89.23	no
125438	aerobic	aerobicⓘ	yes	79.00	no
125438	flagellated	motile2+ⓘ	no	80.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Ilumatobacter coccineum YM16-304(T.).	Fujinami S, Takarada H, Kasai H, Sekine M, Omata S, Harada T, Fukai R, Hosoyama A, Horikawa H, Kato Y, Nakazawa H, Fujita N	Stand Genomic Sci	10.4056/sigs.4007734	2013
Phylogeny	Ilumatobacter nonamiense sp. nov. and Ilumatobacter coccineum sp. nov., isolated from seashore sand.	Matsumoto A, Kasai H, Matsuo Y, Shizuri Y, Ichikawa N, Fujita N, Omura S, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.047316-0	2013
Phylogeny	Ilumatobacter fluminis gen. nov., sp. nov., a novel actinobacterium isolated from the sediment of an estuary.	Matsumoto A, Kasai H, Matsuo Y, Omura S, Shizuri Y, Takahashi Y	J Gen Appl Microbiol	10.2323/jgam.55.201	2009

References

#7794	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18936
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ilumatobacter fluminis (DSM 18936, JCM 17811, MBIC 08263)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004364865

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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