version 5.0 (current version)
General
@ref: 7794
BacDive-ID: 110
DSM-Number: 18936
keywords: Bacteria, 16S sequence, genome sequence, mesophilic
description: Ilumatobacter fluminis YM22-133 is a mesophilic bacterium that was isolated from sediment.
strain history: <- H. Kasai <- Y. Matsuo, Marine Biotechnol. Inst., Kamaishi, Japan; YM22-133
doi: 10.13145/bacdive110.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinobacteria
- domain: Bacteria
- phylum: Actinobacteria
- class: Acidimicrobiia
- order: Acidimicrobiales
- family: Ilumatobacteraceae
- genus: Ilumatobacter
- species: Ilumatobacter fluminis
- full scientific name: Ilumatobacter fluminis Matsumoto et al. 2009
@ref: 7794
domain: Bacteria
phylum: Actinobacteria
class: Acidimicrobiia
order: Acidimicrobiales
family: Ilumatobacteraceae
genus: Ilumatobacter
species: Ilumatobacter fluminis
full scientific name: Ilumatobacter fluminis Matsumoto et al. 2009
strain designation: YM22-133
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7794
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514), + agar (15 g/l), (slow growing strain, needs 5-8 days on agar plates
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
culture temp
- @ref: 7794
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 7794
- sample type: sediment
- geographic location: Okinawa Prefecture, Iriomote, mouth of Kuiragawa River (N 24°19'23.9", E 123°44'44.7")
- country: Japan
- origin.country: JPN
- continent: Asia
- latitude: 24.3233
- longitude: 123.746
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Sediment
Safety information
risk assessment
- @ref: 7794
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7794
- description: Ilumatobacter fluminis gene for 16S rRNA, partial sequence
- accession: AB360343
- length: 1439
- database: ena
- NCBI tax ID: 1331058
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ilumatobacter fluminis DSM 18936 | GCA_004364865 | contig | ncbi | 467091 |
| 66792 | Ilumatobacter fluminis strain DSM 18936 | 467091.3 | wgs | patric | 467091 |
| 66792 | Ilumatobacter fluminis DSM 18936 | 2772190982 | permanent | img | 467091 |
GC content
- @ref: 7794
- GC-content: 68
External links
@ref: 7794
culture collection no.: DSM 18936, JCM 17811, MBIC 08263
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/844567 |
| 20218 | http://www.straininfo.net/strains/869114 |
| 20218 | http://www.straininfo.net/strains/844568 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7794 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18936) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18936 | |||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |