Strain identifier

BacDive ID: 110

Type strain: Yes

Species: Ilumatobacter fluminis

Strain Designation: YM22-133

Culture col. no.: DSM 18936, JCM 17811, MBIC 08263

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7794

BacDive-ID: 110

DSM-Number: 18936

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Ilumatobacter fluminis YM22-133 is a mesophilic bacterium that was isolated from sediment.

strain history: <- H. Kasai <- Y. Matsuo, Marine Biotechnol. Inst., Kamaishi, Japan; YM22-133

doi: 10.13145/bacdive110.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Acidimicrobiia
  • order: Acidimicrobiales
  • family: Ilumatobacteraceae
  • genus: Ilumatobacter
  • species: Ilumatobacter fluminis
  • full scientific name: Ilumatobacter fluminis Matsumoto et al. 2009

@ref: 7794

domain: Bacteria

phylum: Actinobacteria

class: Acidimicrobiia

order: Acidimicrobiales

family: Ilumatobacteraceae

genus: Ilumatobacter

species: Ilumatobacter fluminis

full scientific name: Ilumatobacter fluminis Matsumoto et al. 2009

strain designation: YM22-133

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 7794
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514), + agar (15 g/l), (slow growing strain, needs 5-8 days on agar plates
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf

culture temp

  • @ref: 7794
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 7794
  • sample type: sediment
  • geographic location: Okinawa Prefecture, Iriomote, mouth of Kuiragawa River (N 24°19'23.9", E 123°44'44.7")
  • country: Japan
  • origin.country: JPN
  • continent: Asia
  • latitude: 24.3233
  • longitude: 123.746

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Sediment

Safety information

risk assessment

  • @ref: 7794
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7794
  • description: Ilumatobacter fluminis gene for 16S rRNA, partial sequence
  • accession: AB360343
  • length: 1439
  • database: ena
  • NCBI tax ID: 1331058

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ilumatobacter fluminis DSM 18936GCA_004364865contigncbi467091
66792Ilumatobacter fluminis strain DSM 18936467091.3wgspatric467091
66792Ilumatobacter fluminis DSM 189362772190982permanentimg467091

GC content

  • @ref: 7794
  • GC-content: 68

External links

@ref: 7794

culture collection no.: DSM 18936, JCM 17811, MBIC 08263

straininfo link

@refpassport
20218http://www.straininfo.net/strains/844567
20218http://www.straininfo.net/strains/869114
20218http://www.straininfo.net/strains/844568

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7794Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18936)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18936
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)