Nocardia aobensis DSM 44805 is an obligate aerobe, mesophilic, Gram-positive prokaryote that was isolated from human.
Gram-positive rod-shaped obligate aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacillati |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Nocardiaceae |
| Genus Nocardia |
| Species Nocardia aobensis |
| Full scientific name Nocardia aobensis Kageyama et al. 2005 |
| BacDive ID | Other strains from Nocardia aobensis (2) | Type strain |
|---|---|---|
| 161669 | N. aobensis JCM 15869, IFM 0218 | |
| 161692 | N. aobensis JCM 15895, IFM 0870 |
| @ref | Forms multicellular complex | Medium name | |
|---|---|---|---|
| 19707 | ISP 2 |
| @ref: | 11992 |
| multimedia content: | DSM_44805.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_44805.jpg |
| caption: | Medium 535 28°C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 11992 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 19707 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 40100 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 116419 | CIP Medium 72 | Medium recipe at CIP |
| 67770 | Observationquinones: MK-8(H4, ω-cycl) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | + | builds acid from | from API 50CH acid |
| 19707 | 22599 ChEBI | arabinose | - | ||
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | + | builds acid from | from API 50CH acid |
| 19707 | 62968 ChEBI | cellulose | - | ||
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | + | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 19707 | 28757 ChEBI | fructose | - | ||
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 68371 | 28066 ChEBI | gentiobiose | + | builds acid from | from API 50CH acid |
| 19707 | 17234 ChEBI | glucose | + | ||
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 19707 | 29864 ChEBI | mannitol | - | ||
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | + | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | + | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 19707 | 17268 ChEBI | myo-inositol | - | ||
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 116419 | 17632 ChEBI | nitrate | + | reduction | |
| 116419 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 19707 | 16634 ChEBI | raffinose | - | ||
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 19707 | 26546 ChEBI | rhamnose | - | ||
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 19707 | 17992 ChEBI | sucrose | - | ||
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | + | builds acid from | from API 50CH acid |
| 68379 | 16199 ChEBI | urea | - | hydrolysis | from API Coryne |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| 19707 | 18222 ChEBI | xylose | - |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 116419 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | + | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | - | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 116419 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68379 | gelatinase | - | from API Coryne | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 116419 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 116419 | ornithine decarboxylase | - | 4.1.1.17 | |
| 116419 | oxidase | - | ||
| 68379 | pyrazinamidase | - | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 116419 | urease | - | 3.5.1.5 | |
| 68379 | urease | - | 3.5.1.5 | from API Coryne |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116419 | not determinedn.d. | + | - | - | + | + | + | - | - | - | + | + | + | + | - | - | - | - | + | - | +/- | + | + | + | + | + | + | + | + | + | + | + | + | - | - | - | - | - | - | + | + | - | + | - | - | - | - | +/- | - | - |
Global distribution of 16S sequence JF797305 (>99% sequence identity) for Nocardia from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM30837v1 assembly for Nocardia aobensis NBRC 100429 | contig | 1206720 | 19.22 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Nocardia aobensis strain DSM 44805 16S ribosomal RNA gene, partial sequence | JF797305 | 1412 | 1206720 | ||
| 20218 | Nocardia aobensis NBRC 100429 strain DSM 44805 16S ribosomal RNA gene, partial sequence | JN041615 | 462 | 1206720 | ||
| 20218 | Nocardia aobensis gene for 16S rRNA, partial sequence, strain:IFM 0372 | AB126876 | 1515 | 1206720 | ||
| 20218 | Nocardia aobensis 16S ribosomal RNA gene, partial sequence | GQ376159 | 1439 | 257277 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 99.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 97.90 | no |
| 125439 | motility | BacteriaNetⓘ | no | 85.10 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 75.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 91.40 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.14 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 66.57 | no |
| 125438 | aerobic | aerobicⓘ | yes | 87.52 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 95.90 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 90.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Traumatic endophthalmitis caused by Nocardia kruczakiae in a patient with traumatic eye injury. | Compte RB, Martinez-Osorio H, Carrasco G, Lorente B, Elizalde J, Valdezate S, Lorente R, Iglesias E, Saez-Nieto JA. | J Ophthalmic Inflamm Infect | 10.1186/s12348-015-0067-7 | 2015 | ||
| Isolation and identification of endophytic actinobacteria from Iris persica and Echium amoenum plants and investigation of their effects on germination and growth of wheat plant. | Oloumi H, Khaleghi M, Dalvand A. | Food Sci Nutr | 10.1002/fsn3.3488 | 2023 | ||
| Heterologous expression of the thiopeptide antibiotic GE2270 from Planobispora rosea ATCC 53733 in Streptomyces coelicolor requires deletion of ribosomal genes from the expression construct. | Flinspach K, Kapitzke C, Tocchetti A, Sosio M, Apel AK. | PLoS One | 10.1371/journal.pone.0090499 | 2014 | ||
| Complete Genome Sequence of Nocardia iowensis DSM 45197T (= NRRL 5646T). | Collins Fairclough A, Sproer C, Swiderski J, Bunk B, Lamm AS. | Microbiol Resour Announc | 10.1128/mra.00581-22 | 2023 | ||
| Enzymology | Functions of enzyme domains in 2-methylisoborneol biosynthesis and enzymatic synthesis of non-natural analogs. | Gu B, Liang LF, Dickschat JS. | Beilstein J Org Chem | 10.3762/bjoc.19.104 | 2023 | |
| Search for natural products from actinomycetes of the genus Nocardia. | Hara Y. | J Nat Med | 10.1007/s11418-024-01833-y | 2024 | ||
| Genetics | Nobachelins, new siderophores from Nocardiopsisbaichengensis protecting Caenorhabditiselegans from Pseudomonasaeruginosa infection. | Zhao H, Ren Y, Xie F, Dai H, Liu H, Fu C, Muller R. | Synth Syst Biotechnol | 10.1016/j.synbio.2023.09.007 | 2023 | |
| Amamistatins isolated from Nocardia altamirensis. | Steinmetz T, Hiller W, Nett M. | Beilstein J Org Chem | 10.3762/bjoc.18.40 | 2022 | ||
| Oxolane Ammonium Salts (Muscarine-Like)-Synthesis and Microbiological Activity. | Bogdanowicz P, Madaj J, Szweda P, Sikorski A, Samaszko-Fiertek J, Dmochowska B. | Int J Mol Sci | 10.3390/ijms25042368 | 2024 | ||
| Genetics | Functional analysis of a small cryptic plasmid pYS1 from Nocardia. | Shibayama Y, Dabbs ER, Yazawa K, Mikami Y. | Plasmid | 10.1016/j.plasmid.2011.04.001 | 2011 | |
| Enzymology | Eujavanicols A-C, decalin derivatives from Eupenicillium javanicum. | Nakadate S, Nozawa K, Horie H, Fujii Y, Nagai M, Hosoe T, Kawai K, Yaguchi T, Fukushima K. | J Nat Prod | 10.1021/np078008a | 2007 | |
| Design, Dimerization, and Recombinant Production of MCh-AMP1-Derived Peptide in Escherichia coli and Evaluation of Its Antifungal Activity and Cytotoxicity. | Seyedjavadi SS, Khani S, Amani J, Halabian R, Goudarzi M, Hosseini HM, Eslamifar A, Shams-Ghahfarokhi M, Imani Fooladi AA, Razzaghi-Abyaneh M. | Front Fungal Biol | 10.3389/ffunb.2021.638595 | 2021 | ||
| 4-benzyl-3-phenyl-5H-furan-2-one, a vasodilator isolated from Malbranchea filamentosa IFM 41300. | Hosoe T, Iizuka T, Komai S, Wakana D, Itabashi T, Nozawa K, Fukushima K, Kawai K. | Phytochemistry | 10.1016/j.phytochem.2005.08.014 | 2005 | ||
| Phylogeny | Assignment of reference 5'-end 16S rDNA sequences and species-specific sequence polymorphisms improves species identification of Nocardia. | Kong F, Chen SC, Chen X, Sintchenko V, Halliday C, Cai L, Tong Z, Lee OC, Sorrell TC. | Open Microbiol J | 10.2174/1874285800903010097 | 2009 | |
| Metabolism | Isolation of a gene responsible for the oxidation of trans-anethole to para-anisaldehyde by Pseudomonas putida JYR-1 and its expression in Escherichia coli. | Han D, Ryu JY, Kanaly RA, Hur HG. | Appl Environ Microbiol | 10.1128/aem.00781-12 | 2012 | |
| Phylogeny | Nocardia aobensis Sp. Nov., isolated from patients in Japan. | Kageyama A, Suzuki S, Yazawa K, Nishimura K, Kroppenstedt RM, Mikami Y | Microbiol Immunol | 10.1111/j.1348-0421.2004.tb03613.x | 2004 | |
| Phylogeny | Nocardia kroppenstedtii sp. nov., an actinomycete isolated from a lung transplant patient with a pulmonary infection. | Jones AL, Fisher AJ, Mahida R, Gould K, Perry JD, Hannan MM, Judge EP, Brown R, Boagey K, Goodfellow M. | Int J Syst Evol Microbiol | 10.1099/ijs.0.048330-0 | 2014 | |
| Phylogeny | Nocardia goodfellowii sp. nov. and Nocardia thraciensis sp. nov., isolated from soil. | Sazak A, Sahin N, Camas M. | Int J Syst Evol Microbiol | 10.1099/ijs.0.031559-0 | 2012 | |
| Phylogeny | Tsukamurella tyrosinosolvens sp. nov. | Yassin AF, Rainey FA, Burghardt J, Brzezinka H, Schmitt S, Seifert P, Zimmermann O, Mauch H, Gierth D, Lux I, Schaal KP. | Int J Syst Bacteriol | 10.1099/00207713-47-3-607 | 1997 | |
| Phylogeny | Isolation of toxigenic Nocardiopsis strains from indoor environments and description of two new Nocardiopsis Species, N. exhalans sp. nov. and N. umidischolae sp. nov. | Peltola JS, Andersson MA, Kampfer P, Auling G, Kroppenstedt RM, Busse HJ, Salkinoja-Salonen MS, Rainey FA. | Appl Environ Microbiol | 10.1128/aem.67.9.4293-4304.2001 | 2001 | |
| Phylogeny | Nocardia mikamii sp. nov., isolated from human pulmonary infections in the USA. | Jannat-Khah D, Kroppenstedt RM, Klenk HP, Sproer C, Schumann P, Lasker BA, Steigerwalt AG, Hinrikson HP, Brown JM | Int J Syst Evol Microbiol | 10.1099/ijs.0.015594-0 | 2009 |
| #11992 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44805 |
| #19707 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40100 | ; Curators of the CIP; |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #116419 | Collection of Institut Pasteur ; Curators of the CIP; CIP 109046 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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