Name: Thermodesulfovibrio aggregans TGE-P1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10540

Type strain:

Species: Thermodesulfovibrio aggregans

Strain Designation: TGE-P1

Culture col. no.: DSM 17283, JCM 13213

Strain history: Y. Sekiguchi TGE-P1.

NCBI tax ID(s): 1295128 (strain), 86166 (species)

SI-ID 399740

DSM 17283

Section

Thermodesulfovibrio aggregans TGE-P1 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from sludge granules of thermophilic UASB reactor treating organic wastewater.

Gram-negative
rod-shaped
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Nitrospirota*
	Class	*Thermodesulfovibrionia*
	Order	*Thermodesulfovibrionales*
	Family	*Thermodesulfovibrionaceae*
	Genus	*Thermodesulfovibrio*
	Species	**Thermodesulfovibrio aggregans**
	Full Scientific Name (LPSN)	Thermodesulfovibrio aggregans Sekiguchi et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #31197]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #31197]	Cell length	03-07 µm

[Ref.: #31197]	Cell width	0.3-0.4 µm

[Ref.: #31197]	Cell shape	rod-shaped

[Ref.: #31197]	Motility	no

[Ref.: #31197]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6871]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #6871]

Culture medium growth

[Ref.: #6871]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6871]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6871]	growth	60 °C
[Ref.: #31197]	growth	45-70 °C
[Ref.: #31197]	optimum	60 °C
[Ref.: #67770]	growth	55 °C

[Ref.: #6871]	Temperature range	thermophilic
[Ref.: #31197]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.371

	pH	Kind of pH		pH
[Ref.: #31197]			optimum	6.5-7
[Ref.: #31197]			growth	6-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6871]	Oxygen tolerance	anaerobe
[Ref.: #31197]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.564

[Ref.: #31197]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %98.984

[Ref.: #31197]

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31197]		acetate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6871]	Sample type/isolated from	sludge granules of thermophilic UASB reactor treating organic wastewater
[Ref.: #6871]	Country	Japan
[Ref.: #6871]	Country ISO 3 Code	JPN
[Ref.: #6871]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Thermophilic methanogenic sludge granules treating organic wastewater
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Anaerobic digestor
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Wastewater
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB021302 (>99% sequence identity) for Thermodesulfovibrio aggregans subclade from Microbeatlas

Aquatic Samples	32
Soil Samples	3
Animal Samples	10
Plant Samples
Total Samples	45

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6871]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6871]	Thermodesulfovibrio aggregans gene for 16S rRNA	AB021302	1485	ENA	86166 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermodesulfovibrio aggregans TGE-P1	GCA_001514535	scaffold	GenBank	86166 tax ID
[Ref.: #66792]	Thermodesulfovibrio aggregans JCM 13213	GCA_001312085	contig	GenBank	1295128 tax ID	*
[Ref.: #66792]	Thermodesulfovibrio aggregans JCM 13213	1295128.3	wgs	PATRIC	1295128 tax ID	*
[Ref.: #66792]	Thermodesulfovibrio aggregans strain TGE-P1	86166.4	wgs	PATRIC	86166 tax ID	*
[Ref.: #66792]	Thermodesulfovibrio aggregans JCM 13213	2728369708	draft	JGI IMG/M	1295128 tax ID	*

[Ref.: #6871]	GC-content	35.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31197]	GC-content	34 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermodesulfovibrio aggregans TGE-P1 NCBI: GCA_001514535.1
[Ref.: #69481]	spore-forming	no	88	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermodesulfovibrio aggregans JCM 13213 PATRIC: 1295128.3
[Ref.: #69480]	motile	yes	73.551	no
[Ref.: #69480]	gram-positive	no	99.566	yes
[Ref.: #69480]	anaerobic	yes	99.304	yes
[Ref.: #69480]	aerobic	no	99.024	yes
[Ref.: #69480]	halophile	no	90.301	no
[Ref.: #69480]	spore-forming	no	94.884	no
[Ref.: #69480]	glucose-util	no	55.487	no
[Ref.: #69480]	flagellated	no	94.009	yes
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-ferment	no	87.84	no

Availability in culture collections External links

[Ref.: #6871]

Culture collection no.

DSM 17283, JCM 13213

[Ref.: #79816]

SI-ID 399740

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Thermodesulfovibrio aggregans TGE-P1T, an Obligately Anaerobic, Thermophilic, Sulfate-Reducing Bacterium in the Phylum Nitrospirae.	Matsuura N, Ohashi A, Tourlousse DM, Sekiguchi Y	Genome Announc	10.1128/genomeA.00089-16	2016	*
Phylogeny	Thermodesulfovibrio aggregans sp. nov. and Thermodesulfovibrio thiophilus sp. nov., anaerobic, thermophilic, sulfate-reducing bacteria isolated from thermophilic methanogenic sludge, and emended description of the genus Thermodesulfovibrio.	Sekiguchi Y, Muramatsu M, Imachi H, Narihiro T, Ohashi A, Harada H, Hanada S, Kamagata Y	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000893-0	2008	*

References

#6871

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17283

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31197

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27524 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#79816

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399740.1 )

#27524

IJSEM 2541 2008 ( DOI 10.1099/ijs.0.2008/000893-0 , PubMed 18984690 )

* These data were automatically processed and therefore are not curated

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Thermodesulfovibrio aggregans TGE-P1

Thermodesulfovibrio aggregans JCM 13213

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