Name: Thermodesulfovibrio hydrogeniphilus HBr5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10539

Type strain:

Species: Thermodesulfovibrio hydrogeniphilus

Strain Designation: HBr5

Culture col. no.: DSM 18151, JCM 13991

Strain history: M.-L. Fardeau HBr5.

NCBI tax ID(s): 1123374 (strain), 412896 (species)

SI-ID 398866

DSM 18151

Section

Thermodesulfovibrio hydrogeniphilus HBr5 is an anaerobe, thermophilic bacterium that was isolated from hot spring.

anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Nitrospirota*
	Class	*Thermodesulfovibrionia*
	Order	*Thermodesulfovibrionales*
	Family	*Thermodesulfovibrionaceae*
	Genus	*Thermodesulfovibrio*
	Species	**Thermodesulfovibrio hydrogeniphilus**
	Full Scientific Name (LPSN)	Thermodesulfovibrio hydrogeniphilus Haouari et al. 2009

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7336]

Culture medium

DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)

[Ref.: #7336]

Culture medium growth

[Ref.: #7336]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7336]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7336]			growth	65 °C
[Ref.: #67770]			growth	65 °C

[Ref.: #7336]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7336]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7336]	Sample type/isolated from	hot spring
[Ref.: #7336]	Geographic location (country and/or sea, region)	Fernana, Hamam Essalhine
[Ref.: #7336]	Country	Tunisia
[Ref.: #7336]	Country ISO 3 Code	TUN
[Ref.: #7336]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Terrestrial hot spring
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hamam Essalhine
[Ref.: #67770]	Country	Tunisia
[Ref.: #67770]	Country ISO 3 Code	TUN
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF081294 (>99% sequence identity) for Thermodesulfovibrio hydrogeniphilus subclade from Microbeatlas

Aquatic Samples	13
Soil Samples	1
Animal Samples	1
Plant Samples
Total Samples	15

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7336]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7336]	Thermodesulfovibrio hydrogeniphilus strain Hbr5 16S ribosomal RNA gene, partial sequence	EF081294	1518	ENA	1123374 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermodesulfovibrio hydrogeniphilus DSM 18151	2574179746	draft	JGI IMG/M	1123374 tax ID	*

[Ref.: #7336]

GC-content

36.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7336]

Culture collection no.

DSM 18151, JCM 13991

[Ref.: #79815]

SI-ID 398866

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermodesulfovibrio hydrogeniphilus sp. nov., a new thermophilic sulphate-reducing bacterium isolated from a Tunisian hot spring.	Haouari O, Fardeau ML, Cayol JL, Fauque G, Casiot C, Elbaz-Poulichet F, Hamdi M, Ollivier B	Syst Appl Microbiol	10.1016/j.syapm.2007.12.002	2008	*

References

#7336

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18151

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#79815

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398866.1 )

* These data were automatically processed and therefore are not curated

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