Name: Neisseria shayeganii 871
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 10496

Type strain:

Species: Neisseria shayeganii

Strain Designation: 871, WC 08-871

Culture col. no.: CCUG 59856, DSM 22246, CIP 109933

Strain history: CIP <- 2009, W.J. Wolfgang, Wadsworth Cent., Albany, New-York, USA <- Ellis Hosp., New-York, USA: strain WC 08-871

NCBI tax ID(s): 607712 (species)

SI-ID 371496

CIP 109933, DSM 22246, CCUG 59856

Special Collections

Other strains from Neisseria shayeganii

Section

Neisseria shayeganii 871 is a microaerophile, Gram-negative, rod-shaped bacterium that was isolated from patient's sputum.

Gram-negative
rod-shaped
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Neisseriaceae*
	Genus	*Neisseria*
	Species	**Neisseria shayeganii**
	Full Scientific Name (LPSN)	Neisseria shayeganii Wolfgang et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29848]	Gram stain	negative
[Ref.: #122585]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.604

[Ref.: #29848]	Cell length	4 µm

[Ref.: #29848]	Cell width	1.25 µm

[Ref.: #29848]	Cell shape	rod-shaped
[Ref.: #122585]	Cell shape	rod-shaped

[Ref.: #29848]	Motility	no
[Ref.: #122585]	Motility	no

[Ref.: #16228]

Incubation period

1-2 days

[Ref.: #29848]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16228]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16228]

Culture medium growth

[Ref.: #16228]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16228]

Culture medium composition

expand / minimize

[Ref.: #33676]

Culture medium

MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria

[Ref.: #33676]

Culture medium growth

[Ref.: #33676]

Culture medium composition

expand / minimize

[Ref.: #122585]

Culture medium

CIP Medium 10

[Ref.: #122585]

Culture medium growth

[Ref.: #122585]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122585]

Culture medium

CIP Medium 45

[Ref.: #122585]

Culture medium growth

[Ref.: #122585]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16228]	growth	37 °C
[Ref.: #29848]	growth	10-42 °C
[Ref.: #33676]	growth	37 °C
[Ref.: #62133]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16228]	Oxygen tolerance	microaerophile
[Ref.: #29848]	Oxygen tolerance	facultative anaerobe
[Ref.: #62133]	Oxygen tolerance	aerobe
[Ref.: #122585]	Oxygen tolerance	obligate aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %92.315

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68377]	D-fructose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	maltose ChEBI	+	builds acid from	* from API NH
[Ref.: #29848]	nitrate ChEBI	+	reduction
[Ref.: #122585]	nitrate ChEBI	-	reduction
[Ref.: #122585]	nitrite ChEBI	-	reduction
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH

	Metabolite production	Metabolite	Production
[Ref.: #122585]		indole ChEBI	no
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #29848]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #29848]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68377]	alkaline phosphatase	-	3.1.3.1	* from API NH, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68377]	beta-galactosidase	-	3.2.1.23	* from API NH, API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29848]	catalase	+	1.11.1.6
[Ref.: #122585]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29848]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #122585]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #122585]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #16228]	6156	+	+	+	+	-	-	+	-	-	-	+	-	-
[Ref.: #16228]	5716	-	+	+	+	+	-	-	+	-	-	-	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122585]	12229	-	-	+	+	-	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16228]	Sample type/isolated from	patient's sputum
[Ref.: #16228]	Geographic location (country and/or sea, region)	New York, Schenectady County
[Ref.: #16228]	Country	USA
[Ref.: #16228]	Country ISO 3 Code	USA
[Ref.: #16228]	Continent	North America

[Ref.: #62133]	Sample type/isolated from	Human sputum,77-yr-old female
[Ref.: #62133]	Sampling date	2008-02-07
[Ref.: #62133]	Geographic location (country and/or sea, region)	New York,Schenectady County
[Ref.: #62133]	Country	USA
[Ref.: #62133]	Country ISO 3 Code	USA
[Ref.: #62133]	Continent	North America

[Ref.: #122585]	Sample type/isolated from	Human, Sputum
[Ref.: #122585]	Geographic location (country and/or sea, region)	New York
[Ref.: #122585]	Country	United States of America
[Ref.: #122585]	Country ISO 3 Code	USA
[Ref.: #122585]	Continent	North America
[Ref.: #122585]	Isolation date	2008
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ654664 (>99% sequence identity) for Neisseria shayeganii from Microbeatlas

Aquatic Samples	276
Soil Samples	65
Animal Samples	4241
Plant Samples	18
Total Samples	4600

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #122585]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16228]	Neisseria shayeganii 871 strain WC 08-871 16S ribosomal RNA gene, partial sequence	FJ654664	1463	GenBank ENA	1032488 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Neisseria shayeganii 871	GCA_000226875	scaffold	GenBank ENA	1032488 tax ID	*
[Ref.: #66792]	Neisseria shayeganii 871	1032488.3	wgs	PATRIC	1032488 tax ID	*
[Ref.: #66792]	Neisseria shayeganii 871	2513237270	draft	JGI IMG/M	1032488 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Neisseria shayeganii 871 871 NCBI: GCA_000226875.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.604	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.003	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	68.273	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.315	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.461	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.297	yes

Availability in culture collections External links

[Ref.: #16228]

Culture collection no.

CCUG 59856, DSM 22246, CIP 109933

[Ref.: #79773]

SI-ID 371496

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Neisseria wadsworthii sp. nov. and Neisseria shayeganii sp. nov., isolated from clinical specimens.	Wolfgang WJ, Carpenter AN, Cole JA, Gronow S, Habura A, Jose S, Nazarian EJ, Kohlerschmidt DJ, Limberger R, Schoonmaker-Bopp D, Sproer C, Musser KA	Int J Syst Evol Microbiol	10.1099/ijs.0.022426-0	2010	*

References

#16228

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22246

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29848

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26222 (see below)

#33676 ; Curators of the CIP;
#62133 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59856

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#79773

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID371496.1 )

#122585 Collection of Institut Pasteur ; Curators of the CIP; CIP 109933

#26222

IJSEM 91 2011 ( DOI 10.1099/ijs.0.022426-0 , PubMed 20173010 )

* These data were automatically processed and therefore are not curated

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Neisseria shayeganii 871 871

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