Neisseria shayeganii (CCUG 59856, DSM 22246, CIP 109933)

Name: Neisseria shayeganii (CCUG 59856, DSM 22246, CIP 109933)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10496

Type strain

Strain Designation 871, WC 08-871

Culture col. no. CCUG 59856 DSM 22246 CIP 109933 871 WC 08-871

NCBI tax ID(s) 607712

Special Collections DSMZ CCUG CIP Literature strains

Links

Neisseria shayeganii 871 is a microaerophile, mesophilic, Gram-negative prokaryote that was isolated from patient's sputum.

Gram-negative rod-shaped microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 371496

CIP 109933,DSM 22246,CCUG 59856

@ref 20215

Last LPSN update 2025-12-16 09:49:21

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Neisseriaceae

Genus Neisseria

Species Neisseria shayeganii

Full scientific name Neisseria shayeganii Wolfgang et al. 2011

BacDive ID	Other strains from **Neisseria shayeganii** (2)	Type strain
10495	N. shayeganii 12337, WC 04-12337, DSM 22244, CIP 109932, ...
155071	N. shayeganii CCUG 56380 A

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
29848	negative	4 µm	1.25 µm	rod-shaped
122585	negative			rod-shaped
125438	negative

Colony morphology

16228

Incubation period1-2 days

Pigmentation

29848

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16228	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
33676	MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
122585	CIP Medium 10	Medium recipe at CIP
122585	CIP Medium 45	Medium recipe at CIP
16228	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16228	positive	growth	37	mesophilic
29848	positive	growth	10-42
33676	positive	growth	37	mesophilic
62133	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
16228	microaerophile
29848	facultative anaerobe
62133	aerobe
122585	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125438		92.315

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68377	15824 ChEBI	D-fructose	+	builds acid from	from API NH
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68377	17306 ChEBI	maltose	+	builds acid from	from API NH
29848	17632 ChEBI	nitrate	+	reduction
122585	17632 ChEBI	nitrate	-	reduction
122585	16301 ChEBI	nitrite	-	reduction
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH
122585	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
29848	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
29848	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68377	alkaline phosphatase	-	3.1.3.1	from API NH
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68377	beta-galactosidase	-	3.2.1.23	from API NH
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29848	catalase	+	1.11.1.6
122585	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
29848	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
122585	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
68377	tryptophan deaminase	-	4.1.99.1	from API NH
122585	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122585	-	-	+	+	-	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
16228	+	+	+	+	-	-	+	-	-	-	+	-	-
16228	-	+	+	+	+	-	-	+	-	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Patient
#Host Body Product	#Fluids

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16228	patient's sputum	New York, Schenectady County	USA	USA	North America
62133	Human sputum,77-yr-old female	New York,Schenectady County	USA	USA	North America
122585	Human, Sputum	New York	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence FJ654664 (>99% sequence identity) for Neisseria shayeganii from Microbeatlas

Aquatic Samples	276
Soil Samples	65
Animal Samples	4241
Plant Samples	18
Total Samples	4600

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
122585	1	Risk group (French classification) According to TRBA 466
16228	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM22687v1 assembly for Neisseria shayeganii 871	scaffold	GCA_000226875	1032488.3	2513237270	1032488	53.02

Genome browser: GCA_000226875

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16228	Neisseria shayeganii 871 strain WC 08-871 16S ribosomal RNA gene, partial sequence	FJ654664	1463		1032488

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Neisseria shayeganii 871
NCBI: GCA_000226875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.50	no
125439	motility	BacteriaNetⓘ	yes	57.20	no
125439	gram_stain	BacteriaNetⓘ	negative	87.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	82.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Neisseria shayeganii 871 871
NCBI: GCA_000226875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.60	yes
125438	anaerobic	anaerobicⓘ	no	93.00	no
125438	aerobic	aerobicⓘ	yes	68.27	no
125438	spore-forming	spore-formingⓘ	no	92.32	no
125438	thermophilic	thermophileⓘ	no	97.46	no
125438	flagellated	motile2+ⓘ	no	88.30	yes

Literature

Title	Authors	Journal	DOI	Year
In vitro effectiveness of pomegranate extract present in pet oral hygiene products against canine oral bacterial species.	Stephen AS, Nicolas CS, Lloret F, Allaker RP.	Vet World	10.14202/vetworld.2022.1714-1718	2022
Neisseria wadsworthii sp. nov. and Neisseria shayeganii sp. nov., isolated from clinical specimens.	Wolfgang WJ, Carpenter AN, Cole JA, Gronow S, Habura A, Jose S, Nazarian EJ, Kohlerschmidt DJ, Limberger R, Schoonmaker-Bopp D, Sproer C, Musser KA	Int J Syst Evol Microbiol	10.1099/ijs.0.022426-0	2010

References

#16228	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22246
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29848	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26222 (see below)
#33676	; Curators of the CIP;
#62133	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59856
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122585	Collection of Institut Pasteur ; Curators of the CIP; CIP 109933
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Neisseria shayeganii (CCUG 59856, DSM 22246, CIP 109933)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000226875

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media