Name: Neisseria shayeganii 12337
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 10495

Type strain:

Species: Neisseria shayeganii

Strain Designation: 12337, WC 04-12337

Culture col. no.: DSM 22244, CIP 109932, CCUG 60228

Strain history: CIP <- 2009, W.J. Wolfgang, Wadsworth Cent., Albany, New-York, USA <- Hudson Valley Hosp. Cent., New-York, USA: strain WC 04-12337

NCBI tax ID(s): 607712 (species)

SI-ID 371497

CIP 109932, DSM 22244, CCUG 60228

Special Collections

Other strains from Neisseria shayeganii

Section

Neisseria shayeganii 12337 is a microaerophile, Gram-positive, rod-shaped bacterium that was isolated from patient's arm wound.

Gram-positive
rod-shaped
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Neisseriaceae*
	Genus	*Neisseria*
	Species	**Neisseria shayeganii**
	Full Scientific Name (LPSN)	Neisseria shayeganii Wolfgang et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #122584]	Gram stain	positive
[Ref.: #69480]	Gram stain	negative Confidence in %98.104

[Ref.: #122584]	Cell shape	rod-shaped

[Ref.: #122584]	Motility	no

[Ref.: #16226]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16226]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16226]

Culture medium growth

[Ref.: #16226]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16226]

Culture medium composition

expand / minimize

[Ref.: #36850]

Culture medium

MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria

[Ref.: #36850]

Culture medium growth

[Ref.: #36850]

Culture medium composition

expand / minimize

[Ref.: #122584]

Culture medium

CIP Medium 45

[Ref.: #122584]

Culture medium growth

[Ref.: #122584]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122584]

Culture medium

CIP Medium 10

[Ref.: #122584]

Culture medium growth

[Ref.: #122584]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16226]	growth	37 °C
[Ref.: #36850]	growth	37 °C
[Ref.: #62245]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16226]	Oxygen tolerance	microaerophile
[Ref.: #62245]	Oxygen tolerance	microaerophile
[Ref.: #122584]	Oxygen tolerance	obligate aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %92.398
[Ref.: #69481]	Ability of spore formation	no Confidence in %99

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122584]	nitrate ChEBI	+	reduction
[Ref.: #122584]	nitrite ChEBI	-	reduction
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH

	Metabolite production	Metabolite	Production
[Ref.: #122584]		indole ChEBI	no
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68377]	alkaline phosphatase	-	3.1.3.1	* from API NH
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122584]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #122584]	oxidase	+
[Ref.: #68377]	proline-arylamidase	+	3.4.11.5	* from API NH
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #122584]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #62245]

Fatty acid	Percentage	ECL
C16:0	28.6	16
C16:1 ω7c	18.8	15.819
C18:2 ω6,9c/C18:0 ANTE	10.7	17.724
C18:1 ω7c /12t/9t	10.5	17.824
C12:0	8.4	12
C12:0 3OH	7.1	13.455
C14:0	6.8	14
Unidentified	2.7	16.295
C18:1 ω9c	2.5	17.769
C18:1 DMA 17.252	1.5	17.252
C15:0	1.5	15
C17:1 ω8c	0.5	16.792
Unidentified	0.4	12.258

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #62245]	2409	-	-	-	-	-	-	-	+	-	-	+	+	-
[Ref.: #16226]	6154	+	+	+	+	-	-	+/-	-	-	+	+	-	-
[Ref.: #16226]	5718	-	+	+	+	+	-	-	+/-	-	-	+	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #62245]	4488	-	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #122584]	12228	-	+	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16226]	Sample type/isolated from	patient's arm wound
[Ref.: #16226]	Geographic location (country and/or sea, region)	New York, Westchester County
[Ref.: #16226]	Country	USA
[Ref.: #16226]	Country ISO 3 Code	USA
[Ref.: #16226]	Continent	North America

[Ref.: #62245]	Sample type/isolated from	Human wound,47-yr-old woman,arm
[Ref.: #62245]	Sampling date	2004-09-09
[Ref.: #62245]	Geographic location (country and/or sea, region)	NY State,Westchester County
[Ref.: #62245]	Country	USA
[Ref.: #62245]	Country ISO 3 Code	USA
[Ref.: #62245]	Continent	North America

[Ref.: #122584]	Sample type/isolated from	Human, Arm wound
[Ref.: #122584]	Geographic location (country and/or sea, region)	New York
[Ref.: #122584]	Country	United States of America
[Ref.: #122584]	Country ISO 3 Code	USA
[Ref.: #122584]	Continent	North America
[Ref.: #122584]	Isolation date	2004
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Limb	#Arm

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ654665 (>99% sequence identity) for Neisseria shayeganii from Microbeatlas

Aquatic Samples	276
Soil Samples	65
Animal Samples	4241
Plant Samples	18
Total Samples	4600

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #122584]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16226]	Neisseria shayeganii strain WC 04-12337 16S ribosomal RNA gene, partial sequence	FJ654665	1463	GenBank ENA	607712 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Neisseria shayeganii DSM 22244	GCA_014054965	complete	GenBank ENA	607712 tax ID	*
[Ref.: #66792]	Neisseria shayeganii strain DSM 22244	607712.7	complete	PATRIC	607712 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Neisseria shayeganii DSM 22244 NCBI: GCA_014054965.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Neisseria shayeganii DSM 22244 NCBI: GCA_014054965.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.104	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.061	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	67.956	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.398	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.961	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.306	no

Availability in culture collections External links

[Ref.: #16226]

Culture collection no.

DSM 22244, CIP 109932, CCUG 60228

[Ref.: #79772]

SI-ID 371497

References

#16226

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22244

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36850 ; Curators of the CIP;
#62245 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60228

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#79772

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID371497.1 )

#122584 Collection of Institut Pasteur ; Curators of the CIP; CIP 109932
* These data were automatically processed and therefore are not curated

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Neisseria shayeganii DSM 22244

Neisseria shayeganii DSM 22244

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