Name: Kingella oralis UB 38(Dewhirst)
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10463

Type strain:

Species: Kingella oralis

Strain Designation: UB 38(Dewhirst), UB-38

Culture col. no.: DSM 18271, ATCC 51147, CCM 4589, CCUG 30450, CIP 103803, FDC UB-38

Strain history: CIP <- 1993, CCUG <- 1992, F.E. Dewhirst, FDC: strain UB-38 <- K.C. Chen Univ. State of New-York, Buffalo, USA

NCBI tax ID(s): 629741 (strain), 505 (species)

SI-ID 45270

ATCC 51147, CCUG 30450, CIP 103803, CCM 4589, DSM 18271

Section

Kingella oralis UB 38 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from supragingival plaque, periodontitis.

Gram-negative
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Neisseriaceae*
	Genus	*Kingella*
	Species	**Kingella oralis**
	Full Scientific Name (LPSN)	Kingella oralis corrig. Dewhirst et al. 1993

Synonym

Kingella orale

Information on morphological and physiological properties Morphology

[Ref.: #121428]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.982

[Ref.: #121428]	Cell shape	oval-shaped

[Ref.: #121428]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #39857]

Culture medium

MEDIUM 101 - for Kingella oralis

[Ref.: #39857]

Culture medium growth

[Ref.: #39857]

Culture medium composition

expand / minimize

[Ref.: #121428]

Culture medium

CIP Medium 101

[Ref.: #121428]

Culture medium growth

[Ref.: #121428]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #39857]		growth	37 °C
[Ref.: #50085]		growth	37 °C
[Ref.: #121428]		growth	37 °C
[Ref.: #121428]	no	growth	25 °C
[Ref.: #121428]	no	growth	30 °C
[Ref.: #121428]	no	growth	45 °C

[Ref.: #39857]	Temperature range	mesophilic
[Ref.: #50085]	Temperature range	mesophilic
[Ref.: #121428]	Temperature range	mesophilic
[Ref.: #121428]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7479]	Oxygen tolerance	microaerophile
[Ref.: #50085]	Oxygen tolerance	aerobe
[Ref.: #50085]	Oxygen tolerance	microaerophile
[Ref.: #121428]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121428]	esculin ChEBI	-	hydrolysis
[Ref.: #121428]	nitrate ChEBI	-	reduction
[Ref.: #121428]	nitrite ChEBI	+	reduction
[Ref.: #121428]	tributyrin ChEBI	-	hydrolysis

	Metabolite production	Metabolite	Production
[Ref.: #121428]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #121428]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #121428]	beta-galactosidase	-	3.2.1.23
[Ref.: #121428]	catalase	-	1.11.1.6
[Ref.: #121428]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #121428]	gelatinase	-
[Ref.: #121428]	lysine decarboxylase	-	4.1.1.18
[Ref.: #121428]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121428]	oxidase	+
[Ref.: #121428]	tryptophan deaminase	-
[Ref.: #121428]	urease	-	3.5.1.5

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	purine metabolism	63.83	60 of 94
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	glutamate and glutamine metabolism	57.14	16 of 28
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	CO2 fixation in Crenarchaeota	55.56	5 of 9
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	serine metabolism	55.56	5 of 9
[Ref.: #66794]	glycolysis	52.94	9 of 17
[Ref.: #66794]	pyrimidine metabolism	51.11	23 of 45
[Ref.: #66794]	oxidative phosphorylation	50.55	46 of 91
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	heme metabolism	50	7 of 14
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	histidine metabolism	48.28	14 of 29
[Ref.: #66794]	tryptophan metabolism	47.37	18 of 38
[Ref.: #66794]	non-pathway related	47.37	18 of 38
[Ref.: #66794]	leucine metabolism	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	lysine metabolism	45.24	19 of 42
[Ref.: #66794]	lipid metabolism	45.16	14 of 31
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	urea cycle	38.46	5 of 13
[Ref.: #66794]	vitamin B1 metabolism	38.46	5 of 13
[Ref.: #66794]	citric acid cycle	35.71	5 of 14
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	propionate fermentation	30	3 of 10
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	carotenoid biosynthesis	27.27	6 of 22
[Ref.: #66794]	metabolism of disaccharids	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	arginine metabolism	25	6 of 24
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
[Ref.: #66794]	degradation of pentoses	21.43	6 of 28
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7479]	Sample type/isolated from	supragingival plaque, periodontitis
[Ref.: #7479]	Country	USA
[Ref.: #7479]	Country ISO 3 Code	USA
[Ref.: #7479]	Continent	North America

[Ref.: #50085]	Sample type/isolated from	Supra-gingival plaque,adult periodontitis

[Ref.: #121428]	Sample type/isolated from	Human, Dental plaque
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Host Body-Site	#Oral cavity and airways	#Subgingival plaque

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7479]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121428]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7479]	Kingella oralis 16S ribosomal RNA	L06164	1487	ENA	505 tax ID
[Ref.: #20218]	Kingella oralis 16S rRNA gene, partial	AJ247217	457	ENA	629741 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kingella oralis DSM 18271	GCA_014054985	complete	GenBank	505 tax ID	*
[Ref.: #66792]	Kingella oralis ATCC 51147	GCA_000160435	scaffold	GenBank	629741 tax ID	*
[Ref.: #66792]	Kingella oralis ATCC 51147	629741.3	wgs	PATRIC	629741 tax ID	*
[Ref.: #66792]	Kingella oralis strain DSM 18271	505.115	complete	PATRIC	505 tax ID	*
[Ref.: #66792]	Kingella oralis UB-38, ATCC 51147	643886193	draft	JGI IMG/M	629741 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kingella oralis DSM 18271 NCBI: GCA_014054985.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kingella oralis DSM 18271 NCBI: GCA_014054985.1
[Ref.: #69480]	motile	no	89.059	no
[Ref.: #69480]	flagellated	no	96.922	no
[Ref.: #69480]	gram-positive	no	98.671	no
[Ref.: #69480]	anaerobic	no	97.683	yes
[Ref.: #69480]	aerobic	no	96.51	no
[Ref.: #69480]	halophile	no	77.4	no
[Ref.: #69480]	spore-forming	no	97.077	no
[Ref.: #69480]	thermophile	no	99	yes
[Ref.: #69480]	glucose-util	yes	57.114	no
[Ref.: #69480]	glucose-ferment	no	85.287	no

Availability in culture collections External links

[Ref.: #7479]

Culture collection no.

DSM 18271, ATCC 51147, CCM 4589, CCUG 30450, CIP 103803, FDC UB-38

[Ref.: #79740]

SI-ID 45270

References

#7479

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18271

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39857 ; Curators of the CIP;
#50085 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30450

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#79740

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45270.1 )

#121428 Collection of Institut Pasteur ; Curators of the CIP; CIP 103803
* These data were automatically processed and therefore are not curated

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Kingella oralis DSM 18271

Kingella oralis DSM 18271

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