Strain identifier

BacDive ID: 10463

Type strain: Yes

Species: Kingella oralis

Strain Designation: UB 38(Dewhirst), UB-38

Strain history: CIP <- 1993, CCUG <- 1992, F.E. Dewhirst, FDC: strain UB-38 <- K.C. Chen Univ. State of New-York, Buffalo, USA

NCBI tax ID(s): 629741 (strain), 505 (species)

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General

@ref: 7479

BacDive-ID: 10463

DSM-Number: 18271

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Kingella oralis UB 38 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from supragingival plaque, periodontitis.

NCBI tax id

NCBI tax idMatching level
629741strain
505species

strain history

@refhistory
7479<- CCUG <- F. E. Dewhirst, FDC Boston; UB38 <- K. C. Chen, State Univ. New York
121428CIP <- 1993, CCUG <- 1992, F.E. Dewhirst, FDC: strain UB-38 <- K.C. Chen Univ. State of New-York, Buffalo, USA

doi: 10.13145/bacdive10463.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Neisseriaceae
  • genus: Kingella
  • species: Kingella oralis
  • full scientific name: Kingella oralis corrig. Dewhirst et al. 1993

  • synonyms

    • @ref: 20215
    • synonym: Kingella orale

@ref: 7479

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Neisseriaceae

genus: Kingella

species: Kingella oralis

full scientific name: Kingella oralis Dewhirst et al. 1993

strain designation: UB 38(Dewhirst), UB-38

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.982
121428negativeoval-shapedno

colony morphology

  • @ref: 121428

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39857MEDIUM 101 - for Kingella oralisyesDistilled water make up to (1000.000 ml);Hemin (5.000 mg);Tryptic soy agar (40.000 g);Sodium menadione (0.500 mg);Sheep blood (50.000 ml)
121428CIP Medium 101yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=101

culture temp

@refgrowthtypetemperaturerange
39857positivegrowth37mesophilic
50085positivegrowth37mesophilic
121428positivegrowth37mesophilic
121428nogrowth25mesophilic
121428nogrowth30mesophilic
121428nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
7479microaerophile
50085aerobe
50085microaerophile
121428obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1214284853esculin-hydrolysis
12142817632nitrate-reduction
12142816301nitrite+reduction
12142835020tributyrin-hydrolysis

metabolite production

  • @ref: 121428
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
121428oxidase+
121428beta-galactosidase-3.2.1.23
121428alcohol dehydrogenase+1.1.1.1
121428gelatinase-
121428catalase-1.11.1.6
121428gamma-glutamyltransferase-2.3.2.2
121428lysine decarboxylase-4.1.1.18
121428ornithine decarboxylase-4.1.1.17
121428tryptophan deaminase-
121428urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7479supragingival plaque, periodontitisUSAUSANorth America
50085Supra-gingival plaque,adult periodontitis
121428Human, Dental plaque

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Host Body-Site#Oral cavity and airways#Subgingival plaque

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
74792Risk group (German classification)
1214281Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Kingella oralis 16S rRNA gene, partialAJ247217457ena629741
7479Kingella oralis 16S ribosomal RNAL061641487ena505

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kingella oralis DSM 18271GCA_014054985completencbi505
66792Kingella oralis ATCC 51147GCA_000160435scaffoldncbi629741
66792Kingella oralis ATCC 51147629741.3wgspatric629741
66792Kingella oralis strain DSM 18271505.115completepatric505
66792Kingella oralis UB-38, ATCC 51147643886193draftimg629741

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno89.059no
flagellatedno96.922no
gram-positiveno98.671no
anaerobicno97.683yes
aerobicno96.51no
halophileno77.4no
spore-formingno97.077no
thermophileno99yes
glucose-utilyes57.114no
glucose-fermentno85.287no

External links

@ref: 7479

culture collection no.: DSM 18271, ATCC 51147, CCM 4589, CCUG 30450, CIP 103803, FDC UB-38

straininfo link

  • @ref: 79740
  • straininfo: 45270

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7479Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18271)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18271
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39857Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15640
50085Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30450)https://www.ccug.se/strain?id=30450
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
79740Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45270.1StrainInfo: A central database for resolving microbial strain identifiers
121428Curators of the CIPCollection of Institut Pasteur (CIP 103803)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103803