Name: Chitinibacter alvei TNR-14
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 10448

Type strain:

Species: Chitinibacter alvei

Strain Designation: TNR-14

Culture col. no.: DSM 22217, BCRC 17968, LMG 25206

Strain history: <- J.-H. Chou, Natl. Kaohsiung Marine Univ. Taiwan <- W.-M. Chen

NCBI tax ID(s): 591203 (species)

SI-ID 403445

DSM 22217

Special Collections

Section

Chitinibacter alvei TNR-14 is an aerobe, Gram-negative, motile bacterium that was isolated from stream water.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Chromobacteriaceae*
	Genus	*Chitinibacter*
	Species	**Chitinibacter alvei**
	Full Scientific Name (LPSN)	Chitinibacter alvei Yang et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29575]	Gram stain	negative

[Ref.: #29575]	Cell length	1.65 µm

[Ref.: #29575]	Cell width	0.6 µm

[Ref.: #29575]	Cell shape	rod-shaped

[Ref.: #29575]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16208]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #16208]

Culture medium growth

[Ref.: #16208]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16208]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16208]	growth	28 °C
[Ref.: #29575]	growth	10-35 °C
[Ref.: #29575]	optimum	20 °C

	pH	Kind of pH		pH
[Ref.: #29575]			optimum	7
[Ref.: #29575]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29575]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29575]		NaCl		growth	0-1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29575]	alanine ChEBI	+	carbon source
[Ref.: #29575]	asparagine ChEBI	+	carbon source
[Ref.: #29575]	aspartate ChEBI	+	carbon source
[Ref.: #29575]	citrate ChEBI	+	carbon source
[Ref.: #29575]	dextrin ChEBI	+	carbon source
[Ref.: #29575]	esculin ChEBI	+	hydrolysis
[Ref.: #29575]	fructose ChEBI	+	carbon source
[Ref.: #29575]	gluconate ChEBI	+	carbon source
[Ref.: #29575]	glucose ChEBI	+	carbon source
[Ref.: #29575]	glutamate ChEBI	+	carbon source
[Ref.: #29575]	glycerol ChEBI	+	carbon source
[Ref.: #29575]	glycogen ChEBI	+	carbon source
[Ref.: #29575]	histidine ChEBI	+	carbon source
[Ref.: #29575]	L-alaninamide ChEBI	+	carbon source
[Ref.: #29575]	maltose ChEBI	+	carbon source
[Ref.: #29575]	mannose ChEBI	+	carbon source
[Ref.: #29575]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29575]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29575]	nitrate ChEBI	+	reduction
[Ref.: #29575]	phenylalanine ChEBI	+	carbon source
[Ref.: #29575]	serine ChEBI	+	carbon source
[Ref.: #29575]	succinate ChEBI	+	carbon source
[Ref.: #29575]	tween 40 ChEBI	+	carbon source
[Ref.: #29575]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29575]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29575]	catalase	+	1.11.1.6
[Ref.: #29575]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29575]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16208]	Sample type/isolated from	stream water
[Ref.: #16208]	Geographic location (country and/or sea, region)	Kaohsiung Prefecture, Maolin Township
[Ref.: #16208]	Country	Taiwan, Province of China
[Ref.: #16208]	Country ISO 3 Code	TWN
[Ref.: #16208]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ593907 (>99% sequence identity) for Chitinibacter alvei subclade from Microbeatlas

Aquatic Samples	112
Soil Samples	3
Animal Samples	13
Plant Samples	1
Total Samples	129

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16208]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16208]	Chitinibacter alvei strain TNR-14 16S ribosomal RNA gene, partial sequence	FJ593907	1405	GenBank ENA	591203 tax ID

[Ref.: #16208]	GC-content	57.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29575]	GC-content	57.5 mol%

Availability in culture collections External links

[Ref.: #16208]

Culture collection no.

DSM 22217, BCRC 17968, LMG 25206

[Ref.: #79725]

SI-ID 403445

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chitinibacter alvei sp. nov., isolated from stream water.	Yang CS, Sheu SY, Young CC, Arun AB, Cheng CY, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.016170-0	2009	*

References

#16208

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22217

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29575

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25968 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#79725

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403445.1 )

#25968

IJSEM 1760 2010 ( DOI 10.1099/ijs.0.016170-0 , PubMed 19749034 )

* These data were automatically processed and therefore are not curated

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