Strain identifier

BacDive ID: 10448

Type strain: Yes

Species: Chitinibacter alvei

Strain Designation: TNR-14

Strain history: <- J.-H. Chou, Natl. Kaohsiung Marine Univ. Taiwan <- W.-M. Chen

NCBI tax ID(s): 591203 (species)

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General

@ref: 16208

BacDive-ID: 10448

DSM-Number: 22217

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Chitinibacter alvei TNR-14 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from stream water.

NCBI tax id

  • NCBI tax id: 591203
  • Matching level: species

strain history

  • @ref: 16208
  • history: <- J.-H. Chou, Natl. Kaohsiung Marine Univ. Taiwan <- W.-M. Chen

doi: 10.13145/bacdive10448.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Chromobacteriaceae
  • genus: Chitinibacter
  • species: Chitinibacter alvei
  • full scientific name: Chitinibacter alvei Yang et al. 2010

@ref: 16208

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Chromobacteriaceae

genus: Chitinibacter

species: Chitinibacter alvei

full scientific name: Chitinibacter alvei Yang et al. 2010

strain designation: TNR-14

type strain: yes

Morphology

cell morphology

  • @ref: 29575
  • gram stain: negative
  • cell length: 1.65 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

  • @ref: 16208
  • name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830c
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperature
16208positivegrowth28
29575positivegrowth10-35
29575positiveoptimum20

culture pH

@refabilitytypepH
29575positivegrowth06-08
29575positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29575
  • oxygen tolerance: aerobe

halophily

  • @ref: 29575
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2957521217L-alaninamide+carbon source
2957516449alanine+carbon source
2957522653asparagine+carbon source
2957535391aspartate+carbon source
2957516947citrate+carbon source
2957523652dextrin+carbon source
2957528757fructose+carbon source
2957524265gluconate+carbon source
2957517234glucose+carbon source
2957529987glutamate+carbon source
2957517754glycerol+carbon source
2957528087glycogen+carbon source
2957527570histidine+carbon source
2957517306maltose+carbon source
2957537684mannose+carbon source
29575506227N-acetylglucosamine+carbon source
2957528044phenylalanine+carbon source
2957551850methyl pyruvate+carbon source
2957517822serine+carbon source
2957530031succinate+carbon source
2957553423tween 40+carbon source
2957553426tween 80+carbon source
295754853esculin+hydrolysis
2957517632nitrate+reduction

enzymes

@refvalueactivityec
29575alkaline phosphatase+3.1.3.1
29575catalase+1.11.1.6
29575gelatinase+
29575cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 16208
  • sample type: stream water
  • geographic location: Kaohsiung Prefecture, Maolin Township
  • country: Taiwan, Province of China
  • origin.country: TWN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

taxonmaps

  • @ref: 69479
  • File name: preview.99_174210.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_168;96_64855;97_84128;98_114057;99_174210&stattab=map
  • Last taxonomy: Chitinibacter alvei subclade
  • 16S sequence: FJ593907
  • Sequence Identity:
  • Total samples: 129
  • soil counts: 3
  • aquatic counts: 112
  • animal counts: 13
  • plant counts: 1

Safety information

risk assessment

  • @ref: 16208
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16208
  • description: Chitinibacter alvei strain TNR-14 16S ribosomal RNA gene, partial sequence
  • accession: FJ593907
  • length: 1405
  • database: nuccore
  • NCBI tax ID: 591203

GC content

@refGC-contentmethod
1620857.5high performance liquid chromatography (HPLC)
2957557.5

External links

@ref: 16208

culture collection no.: DSM 22217, BCRC 17968, LMG 25206

straininfo link

  • @ref: 79725
  • straininfo: 403445

literature

  • topic: Phylogeny
  • Pubmed-ID: 19749034
  • title: Chitinibacter alvei sp. nov., isolated from stream water.
  • authors: Yang CS, Sheu SY, Young CC, Arun AB, Cheng CY, Chen WM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.016170-0
  • year: 2009
  • mesh: DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Neisseriaceae/*classification/genetics/*isolation & purification/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16208Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22217)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22217
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29575Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2596828776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
79725Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403445.1StrainInfo: A central database for resolving microbial strain identifiers