Name: Plesiocystis pacifica SHI-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 10421

Type strain:

Species: Plesiocystis pacifica

Strain Designation: SHI-1

Culture col. no.: DSM 14876, AJ 13393, JCM 11592

Strain history: T. Iizuka SHI-1.

NCBI tax ID(s): 191768 (species)

SI-ID 111749

JCM 11592, DSM 14876

Special Collections

DSMZ
JCM

Other strains from Plesiocystis pacifica

Section

Plesiocystis pacifica SHI-1 is a bacterium that was isolated from coastal sands.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Nannocystaceae*
	Genus	*Plesiocystis*
	Species	**Plesiocystis pacifica**
	Full Scientific Name (LPSN)	Plesiocystis pacifica Iizuka et al. 2003

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5592]

Culture medium

VY/4-SWS AGAR (DSMZ Medium 958)

[Ref.: #5592]

Culture medium growth

[Ref.: #5592]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5592]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5592]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5592]	Sample type/isolated from	coastal sands
[Ref.: #5592]	Geographic location (country and/or sea, region)	Hachijyo Island, Tokyo
[Ref.: #5592]	Country	Japan
[Ref.: #5592]	Country ISO 3 Code	JPN
[Ref.: #5592]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sand
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hachijo-jima Island
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sandy

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB016469 (>99% sequence identity) for Plesiocystis pacifica subclade from Microbeatlas

Aquatic Samples	1671
Soil Samples	471
Animal Samples	937
Plant Samples	59
Total Samples	3138

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5592]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5592]	Myxobacterium SHI-1 16S rRNA gene, partial sequence	AB016469	1483	GenBank ENA	80815 tax ID

[Ref.: #5592]	GC-content	69.3-70.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	70 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #5592]

Culture collection no.

DSM 14876, AJ 13393, JCM 11592

[Ref.: #79703]

SI-ID 111749

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Plesiocystis pacifica gen. nov., sp. nov., a marine myxobacterium that contains dihydrogenated menaquinone, isolated from the Pacific coasts of Japan.	Iizuka T, Jojima Y, Fudou R, Hiraishi A, Ahn JW, Yamanaka S	Int J Syst Evol Microbiol	10.1099/ijs.0.02418-0	2003	*

References

#5592

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14876

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#79703

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID111749.1 )

* These data were automatically processed and therefore are not curated

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