Name: Alkaliphilus oremlandii OhILAs
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2863

Type strain:

Species: Alkaliphilus oremlandii

Strain Designation: OhILAs

Culture col. no.: DSM 21761, ATCC BAA-1360

Strain history: <- J. F. Stolz, Duquesne Univ., Dept. Biol. Sci., Pittsburgh, USA; OhILAs <- A. Down

NCBI tax ID(s): 461876 (species)

SI-ID 298317

ATCC BAA-1360, DSM 21761

Section

Alkaliphilus oremlandii OhILAs is an anaerobe, mesophilic bacterium that was isolated from sediments.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Alkaliphilus*
	Species	**Alkaliphilus oremlandii**
	Full Scientific Name (LPSN)	Alkaliphilus oremlandii Fisher et al. 2009

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15923]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #15923]

Culture medium growth

[Ref.: #15923]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15923]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15923]			growth	37 °C

[Ref.: #15923]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15923]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15923]	Sample type/isolated from	sediments
[Ref.: #15923]	Geographic location (country and/or sea, region)	Ohio river
[Ref.: #15923]	Country	USA
[Ref.: #15923]	Country ISO 3 Code	USA
[Ref.: #15923]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ250645 (>99% sequence identity) for Alkaliphilus oremlandii subclade from Microbeatlas

Aquatic Samples	751
Soil Samples	991
Animal Samples	4682
Plant Samples	310
Total Samples	6734

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15923]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15923]	Clostridium sp. OhILAs 16S ribosomal RNA gene, partial sequence	DQ250645	1314	ENA	350688 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alkaliphilus oremlandii OhILAs	GCA_000018325	complete	GenBank	350688 tax ID	*
[Ref.: #66792]	Alkaliphilus oremlandii OhILAs	350688.5	complete	PATRIC	350688 tax ID	*
[Ref.: #66792]	Alkaliphilus oremlandii OhILAs	641228475	complete	JGI IMG/M	350688 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alkaliphilus oremlandii OhILAs OhILAs NCBI: GCA_000018325.1
[Ref.: #69480]	motile	yes	91.118	no
[Ref.: #69480]	flagellated	no	60.693	no
[Ref.: #69480]	gram-positive	yes	64.234	no
[Ref.: #69480]	anaerobic	yes	98.377	yes
[Ref.: #69480]	aerobic	no	96.464	yes
[Ref.: #69480]	halophile	no	88.318	no
[Ref.: #69480]	spore-forming	yes	91.891	no
[Ref.: #69480]	glucose-util	yes	81.656	no
[Ref.: #69480]	thermophile	no	98.771	yes
[Ref.: #69480]	glucose-ferment	no	60.426	no

Availability in culture collections External links

[Ref.: #15923]

Culture collection no.

DSM 21761, ATCC BAA-1360

[Ref.: #72387]

SI-ID 298317

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Arsenic biotransformation in solid waste residue: comparison of contributions from bacteria with arsenate and iron reducing pathways.	Tian H, Shi Q, Jing C	Environ Sci Technol	10.1021/es504618x	2015	*
Metabolism	Mapping the protein profile involved in the biotransformation of organoarsenicals using an arsenic metabolizing bacterium.	Thomas JA, Chovanec P, Stolz JF, Basu P	Metallomics	10.1039/c4mt00185k	2014	*
Metabolism	Microbial degradation of linseed oil-based elastomer and subsequent accumulation of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) copolymer.	Pramanik N, Das R, Rath T, Kundu PP	Appl Biochem Biotechnol	10.1007/s12010-014-1061-5	2014	*
Metabolism	Tandem use of selenocysteine: adaptation of a selenoprotein glutaredoxin for reduction of selenoprotein methionine sulfoxide reductase.	Kim MJ, Lee BC, Jeong J, Lee KJ, Hwang KY, Gladyshev VN, Kim HY	Mol Microbiol	10.1111/j.1365-2958.2010.07500.x	2011	*
Metabolism	A proteome investigation of roxarsone degradation by Alkaliphilus oremlandii strain OhILAs.	Chovanec P, Stolz JF, Basu P	Metallomics	10.1039/b915479e	2009	*
Metabolism	The selenoproteome of Clostridium sp. OhILAs: characterization of anaerobic bacterial selenoprotein methionine sulfoxide reductase A.	Kim HY, Zhang Y, Lee BC, Kim JR, Gladyshev VN	Proteins	10.1002/prot.22212	2009	*
Metabolism	Transformation of inorganic and organic arsenic by Alkaliphilus oremlandii sp. nov. strain OhILAs.	Fisher E, Dawson AM, Polshyna G, Lisak J, Crable B, Perera E, Ranganathan M, Thangavelu M, Basu P, Stolz JF	Ann N Y Acad Sci	10.1196/annals.1419.006	2008	*

References

#15923

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21761

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72387

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID298317.1 )

* These data were automatically processed and therefore are not curated

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Alkaliphilus oremlandii OhILAs OhILAs

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