Name: Chryseolinea flava SDU1-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159842

Type strain:

Species: Chryseolinea flava

Strain Designation: SDU1-6

Culture col. no.: CGMCC 1.13492, JCM 32520

Strain history: Q. Chen; State Key Lab. of Microb. Technol., Shandong Univ., China; SDU1-6.

NCBI tax ID(s): 2059302 (species)

Section

Chryseolinea flava SDU1-6 is an aerobe, mesophilic, Gram-negative bacterium that has a yellow pigmentation and was isolated from the soil which was spread over living Escherichia coli cells on WCX basal medium, which is a traditional technique for the enrichment of myxobacterial fruiting bodies.

Gram-negative
motile
pigmented
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Fulvivirgaceae*
	Genus	*Chryseolinea*
	Species	**Chryseolinea flava**
	Full Scientific Name (LPSN)	Chryseolinea flava Wang et al. 2018

Synonym

Pseudochryseolinea flava

Information on morphological and physiological properties Morphology

[Ref.: #66736]	Gram stain	negative

[Ref.: #66736]	Cell length	3.0-8.0 µm

[Ref.: #66736]	Cell width	0.2-0.4 µm

[Ref.: #66736]	Cell shape	rod-shaped

[Ref.: #66736]	Motility	yes

[Ref.: #66736]	Colony color	yellow
[Ref.: #66736]	Cultivation medium used	VY/2 medium

[Ref.: #66736]	Pigment production	yes
[Ref.: #66736]	Pigmentation color	yellow

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

VY/2 medium

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Culture medium growth

		Temperature
[Ref.: #66736]	optimum	25 °C
[Ref.: #66736]	growth	13-37 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #66736]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66736]			optimum	7.5
[Ref.: #66736]			growth	5-10

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66736]		NaCl		growth	0-0.1	%(w/v)

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Observation

colonies with thin and spreading swarms

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66736]	2,3-butanediol ChEBI	-	carbon source
[Ref.: #66736]	2-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #66736]	2-oxobutanoate ChEBI	-	carbon source
[Ref.: #66736]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #66736]	2-oxopentanoate ChEBI	-	carbon source
[Ref.: #66736]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #66736]	4-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #66736]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #66736]	acetic acid ChEBI	-	carbon source
[Ref.: #66736]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #66736]	alpha-D-glucose ChEBI	-	carbon source
[Ref.: #66736]	bromosuccinate ChEBI	-	carbon source
[Ref.: #66736]	casein	+	hydrolysis
[Ref.: #66736]	cellobiose ChEBI	+	carbon source
[Ref.: #66736]	cellulose ChEBI	-	degradation
[Ref.: #66736]	cis-aconitate ChEBI	-	carbon source
[Ref.: #66736]	citric acid ChEBI	-	carbon source
[Ref.: #66736]	D-alanine ChEBI	-	carbon source
[Ref.: #66736]	D-arabitol ChEBI	-	carbon source
[Ref.: #66736]	D-fructose ChEBI	+	carbon source
[Ref.: #66736]	D-galactonic acid lactone ChEBI	-	carbon source
[Ref.: #66736]	D-galactose ChEBI	+	carbon source
[Ref.: #66736]	D-galacturonic acid ChEBI	-	carbon source
[Ref.: #66736]	D-glucarate ChEBI	-	carbon source
[Ref.: #66736]	D-gluconate ChEBI	-	carbon source
[Ref.: #66736]	D-glucosaminic acid ChEBI	-	carbon source
[Ref.: #66736]	D-glucose 6-phosphate ChEBI	-	carbon source
[Ref.: #66736]	D-glucuronate ChEBI	-	carbon source
[Ref.: #66736]	D-mannitol ChEBI	-	carbon source
[Ref.: #66736]	D-mannose ChEBI	+	carbon source
[Ref.: #66736]	D-psicose ChEBI	-	carbon source
[Ref.: #66736]	D-serine ChEBI	-	carbon source
[Ref.: #66736]	D-sorbitol ChEBI	-	carbon source
[Ref.: #66736]	dextrin ChEBI	+	carbon source
[Ref.: #66736]	DL-carnitine ChEBI	-	carbon source
[Ref.: #66736]	erythritol ChEBI	-	carbon source
[Ref.: #66736]	ethanolamine ChEBI	-	carbon source
[Ref.: #66736]	formate ChEBI	-	carbon source
[Ref.: #66736]	gamma-aminobutyric acid ChEBI	-	carbon source
[Ref.: #66736]	gelatin ChEBI	+	degradation
[Ref.: #66736]	gentiobiose ChEBI	+	carbon source
[Ref.: #66736]	glucose 1-phosphate ChEBI	-	carbon source
[Ref.: #66736]	glucuronamide ChEBI	-	carbon source
[Ref.: #66736]	glycerol ChEBI	-	carbon source
[Ref.: #66736]	glycerol 1-phosphate ChEBI	-	carbon source
[Ref.: #66736]	glycogen ChEBI	+	carbon source
[Ref.: #66736]	glycyl L-aspartic acid ChEBI	-	carbon source
[Ref.: #66736]	glycyl-L-glutamate ChEBI	+	carbon source
[Ref.: #66736]	hydroxyproline ChEBI	-	carbon source
[Ref.: #66736]	inosine ChEBI	-	carbon source
[Ref.: #66736]	itaconate ChEBI	-	carbon source
[Ref.: #66736]	L-alaninamide ChEBI	-	carbon source
[Ref.: #66736]	L-alanine ChEBI	-	carbon source
[Ref.: #66736]	L-alanylglycine ChEBI	-	carbon source
[Ref.: #66736]	L-arabinose ChEBI	+	carbon source
[Ref.: #66736]	L-asparagine ChEBI	-	carbon source
[Ref.: #66736]	L-aspartate ChEBI	-	carbon source
[Ref.: #66736]	L-fucose ChEBI	-	carbon source
[Ref.: #66736]	L-glutamate ChEBI	-	carbon source
[Ref.: #66736]	L-histidine ChEBI	-	carbon source
[Ref.: #66736]	L-leucine ChEBI	-	carbon source
[Ref.: #66736]	L-ornithine ChEBI	-	carbon source
[Ref.: #66736]	L-phenylalanine ChEBI	-	carbon source
[Ref.: #66736]	L-proline ChEBI	+	carbon source
[Ref.: #66736]	L-pyroglutamic acid ChEBI	-	carbon source
[Ref.: #66736]	L-rhamnose ChEBI	-	carbon source
[Ref.: #66736]	L-serine ChEBI	-	carbon source
[Ref.: #66736]	L-threonine ChEBI	-	carbon source
[Ref.: #66736]	lactate ChEBI	-	carbon source
[Ref.: #66736]	lactose ChEBI	+	carbon source
[Ref.: #66736]	lactulose ChEBI	-	carbon source
[Ref.: #66736]	malonate ChEBI	-	carbon source
[Ref.: #66736]	maltose ChEBI	-	carbon source
[Ref.: #66736]	melibiose ChEBI	-	carbon source
[Ref.: #66736]	methyl D-glucoside ChEBI	-	carbon source
[Ref.: #66736]	methyl pyruvate ChEBI	-	carbon source
[Ref.: #66736]	monomethyl succinate ChEBI	-	carbon source
[Ref.: #66736]	myo-inositol ChEBI	-	carbon source
[Ref.: #66736]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #66736]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #66736]	nitrate ChEBI	+	reduction
[Ref.: #66736]	phenylethylamine ChEBI	-	carbon source
[Ref.: #66736]	propionate ChEBI	-	carbon source
[Ref.: #66736]	putrescine ChEBI	-	carbon source
[Ref.: #66736]	quinate ChEBI	-	carbon source
[Ref.: #66736]	raffinose ChEBI	-	carbon source
[Ref.: #66736]	ribitol ChEBI	-	carbon source
[Ref.: #66736]	sebacic acid ChEBI	-	carbon source
[Ref.: #66736]	starch ChEBI	+	hydrolysis
[Ref.: #66736]	succinamate ChEBI	-	carbon source
[Ref.: #66736]	succinate ChEBI	-	carbon source
[Ref.: #66736]	sucrose ChEBI	-	carbon source
[Ref.: #66736]	thymidine ChEBI	-	carbon source
[Ref.: #66736]	trehalose ChEBI	-	carbon source
[Ref.: #66736]	turanose ChEBI	-	carbon source
[Ref.: #66736]	tween 40 ChEBI	+	carbon source
[Ref.: #66736]	tween 80 ChEBI	-	carbon source
[Ref.: #66736]	uridine ChEBI	-	carbon source
[Ref.: #66736]	urocanic acid ChEBI	-	carbon source
[Ref.: #66736]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #66736]		catalase	+	1.11.1.6

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66736]

Fatty acid	Percentage
C16:1 w5	31.99
C15:0 iso	27.66
C13:0 iso	7.43
C16:1 w7c/ C16:1 w6c	5.58
C15:0 iso 3OH	3.84
C16:0 3OH	3.83
C16:0	3.69
C17:0 iso 3OH	2.49
C14:0	2.48
C13:1	1.61
C14:0 3OH / iso-C16:1	1.11
C16:0 iso	1.05

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66736]	Sample type/isolated from	the soil which was spread over living Escherichia coli cells on WCX basal medium, which is a traditional technique for the enrichment of myxobacterial fruiting bodies
[Ref.: #66736]	Geographic location (country and/or sea, region)	Jinan campus of Shandong University, Shandong Province
[Ref.: #66736]	Country	China
[Ref.: #66736]	Country ISO 3 Code	CHN
[Ref.: #66736]	Continent	Asia
[Ref.: #66736]	Enrichment culture	VY/2 medium
[Ref.: #66736]	Enrichment culture composition	0.5 % Bakers' yeast, 0.1 % CaCl2 2H2O, 0.5 mgml-1 cyanocobalamin and 1.5 % agar
[Ref.: #66736]	Isolation/enrichment procedure	A bacterial strain, designated SDU1-6 was isolated from an upper soil sample collected on the Jinan campus of Shandong University, Shandong Province, PR China. The isolate was obtained from the soil which was spread over living Escherichia coli cells on WCX basal medium, which is a traditional technique for the enrichment of myxobacterial fruiting bodies. The strain was picked from the enrichment medium and transferred to VY/2 medium containing 0.5 % Bakers' yeast, 0.1 % CaCl2 2H2O, 0.5 mg ml-1cyanocobalamin and 1.5 % agar. The pH of the medium was adjusted to 7.2 before autoclaving. The strain was transferred from the colony edge several times for purification.

[Ref.: #67770]	Sample type/isolated from	Upper soil from the Jinan campus of Shandong University
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shandong Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66736]	Chryseolinea sp. SDU1-6 16S ribosomal RNA gene, partial sequence	MG662377	1523	ENA	2059302 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudochryseolinea flava SDU1-6	GCA_003286915	contig	GenBank	2059302 tax ID
[Ref.: #66792]	Chryseolinea flava SDU1-6	2831614218	draft	JGI IMG/M	2059302 tax ID	*

[Ref.: #66736]

GC-content

43.5 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #66736]

Culture collection no.

CGMCC 1.13492, JCM 32520

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseolinea flava sp. nov., a new species of Chryseolinea isolated from soil.	Wang JJ, Chen Q, Li YZ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003022	2018	*
Phylogeny	Parachryseolinea silvisoli gen. nov., sp. nov., isolated from forest soil, and reclassification of Chryseolinea flava as Pseudochryseolinea flava gen. nov., comb. nov.	Wang C, Lv Y, Li A, Yao Q, Zhu H	Int J Syst Evol Microbiol	10.1099/ijsem.0.005523	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66736

Jing-jing Wang, Qi Chen, Yue-zhong Li: Chryseolinea flava sp. nov., a new species of Chryseolinea isolated from soil. IJSEM 68: 3518 - 3522 2018 ( DOI 10.1099/ijsem.0.003022 , PubMed 30222097 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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