Name: Sutterella parvirubra DSM 19354
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17829

Type strain:

Species: Sutterella parvirubra

Culture col. no.: DSM 19354, JCM 14724, CCUG 57110, YIT 11816, KCTC 15665

Strain history: H. Sakon YIT 11816 <-- H. Sakon and T. Nagai S7.

NCBI tax ID(s): 762967 (strain), 437898 (species)

SI-ID 343820

DSM 19354, JCM 14724, CCUG 57110

Other strains from Sutterella parvirubra

S. parvirubra JCM 14725
S. parvirubra JCM 14726

Section

Sutterella parvirubra DSM 19354 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human faeces .

Gram-negative
ovoid-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Sutterellaceae*
	Genus	*Sutterella*
	Species	**Sutterella parvirubra**
	Full Scientific Name (LPSN)	Sutterella parvirubra Sakon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32412]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #32412]	Cell length	1.2 µm

[Ref.: #32412]	Cell width	0.7 µm

[Ref.: #32412]	Cell shape	ovoid-shaped

[Ref.: #32412]	Motility	no

[Ref.: #8068]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8068]

Culture medium

FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)

[Ref.: #8068]

Culture medium growth

[Ref.: #8068]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8068]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8068]	growth	37 °C
[Ref.: #61199]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #8068]	Temperature range	mesophilic
[Ref.: #61199]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8068]	Oxygen tolerance	anaerobe
[Ref.: #32412]	Oxygen tolerance	anaerobe
[Ref.: #61199]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.955

[Ref.: #32412]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8068]	Sample type/isolated from	human faeces (healthy adult)
[Ref.: #8068]	Country	Japan
[Ref.: #8068]	Country ISO 3 Code	JPN
[Ref.: #8068]	Continent	Asia

[Ref.: #61199]	Sample type/isolated from	Human feces
[Ref.: #61199]	Country	Japan
[Ref.: #61199]	Country ISO 3 Code	JPN
[Ref.: #61199]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB300989 (>99% sequence identity) for Sutterella parvirubra subclade from Microbeatlas

Aquatic Samples	474
Soil Samples	236
Animal Samples	23004
Plant Samples	40
Total Samples	23754

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8068]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8068]	Sutterella parvirubra gene for 16S ribosomal RNA, partial sequence, strain: YIT 11816 (= JCM 14724, = DSM 19354)	AB300989	1489	ENA	762967 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sutterella parvirubra YIT 11816	GCA_000250875	scaffold	GenBank	762967 tax ID	*
[Ref.: #66792]	Sutterella parvirubra YIT 11816	762967.3	wgs	PATRIC	762967 tax ID	*
[Ref.: #66792]	Sutterella parvirubra YIT 11816	2513237371	draft	JGI IMG/M	762967 tax ID	*

[Ref.: #32412]	GC-content	64.4 mol%
[Ref.: #67770]	GC-content	64.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sutterella parvirubra YIT 11816 YIT 11816 NCBI: GCA_000250875.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sutterella parvirubra YIT 11816 YIT 11816 NCBI: GCA_000250875.1
[Ref.: #69480]	motile	no	90.656	yes
[Ref.: #69480]	flagellated	no	95.622	yes
[Ref.: #69480]	gram-positive	no	97.944	no
[Ref.: #69480]	anaerobic	yes	98.073	no
[Ref.: #69480]	aerobic	no	96.178	no
[Ref.: #69480]	halophile	no	76.898	no
[Ref.: #69480]	spore-forming	no	97.726	yes
[Ref.: #69480]	glucose-util	no	69.06	no
[Ref.: #69480]	glucose-ferment	no	77.536	no
[Ref.: #69480]	thermophile	no	98.396	yes

Availability in culture collections External links

[Ref.: #8068]

Culture collection no.

DSM 19354, JCM 14724, CCUG 57110, YIT 11816, KCTC 15665

[Ref.: #86820]

SI-ID 343820

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesosutterella multiformis gen. nov., sp. nov., a member of the family Sutterellaceae and Sutterella megalosphaeroides sp. nov., isolated from human faeces.	Sakamoto M, Ikeyama N, Kunihiro T, Iino T, Yuki M, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003096	2018	*
Phylogeny	Sutterella parvirubra sp. nov. and Megamonas funiformis sp. nov., isolated from human faeces.	Sakon H, Nagai F, Morotomi M, Tanaka R	Int J Syst Evol Microbiol	10.1099/ijs.0.65456-0	2008	*

References

#8068

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19354

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32412

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28636 (see below)

#61199 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57110

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86820

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID343820.1 )

#28636

IJSEM 970 2008 ( DOI 10.1099/ijs.0.65456-0 , PubMed 18398204 )

* These data were automatically processed and therefore are not curated

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Sutterella parvirubra YIT 11816 YIT 11816

Sutterella parvirubra YIT 11816 YIT 11816

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