Name: Parasutterella excrementihominis CCUG 58418
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17830

Type strain:

Species: Parasutterella excrementihominis

Culture col. no.: CCUG 58418, JCM 15078, DSM 21040, KCTC 15162, YIT 11859, CIP 110024

Strain history: <- DSM <- H Sakon, Yakult Central Institute for Microbiological Research; YIT 11859 <- M Morotomi and F. Nagai

NCBI tax ID(s): 762966 (strain), 487175 (species)

Other strains from Parasutterella excrementihominis

P. excrementihominis CLA-SR-150, DSM 111000

Section

Parasutterella excrementihominis CCUG 58418 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human faeces .

Gram-negative
ovoid-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Sutterellaceae*
	Genus	*Parasutterella*
	Species	**Parasutterella excrementihominis**
	Full Scientific Name (PNU)	Parasutterella excrementihominis Nagai et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #28954]	Gram stain	negative
[Ref.: #28954]	Cell length	1.75 µm
[Ref.: #28954]	Cell width	0.75 µm
[Ref.: #28954]	Cell shape	ovoid-shaped
[Ref.: #28954]	Motility	no

[Ref.: #67771]	Gram stain	negative

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #67771]	Cell shape	coccus-shaped
[Ref.: #67771]	Motility	no

[Ref.: #67771]	Cell shape	ovoid-shaped

[Ref.: #15533]

Incubation period

2-3 days

[Ref.: #28954]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15533]

Culture medium

BTU MEDIUM (DSMZ Medium 413)

[Ref.: #15533]

Culture medium growth

[Ref.: #15533]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #15533]

Culture medium composition

expand / minimize

[Ref.: #15533]

Culture medium

FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)

[Ref.: #15533]

Culture medium growth

[Ref.: #15533]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #15533]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15533]	growth	37 °C
[Ref.: #61685]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #15533]	Temperature range	mesophilic
[Ref.: #61685]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15533]	Oxygen tolerance	anaerobe
[Ref.: #28954]	Oxygen tolerance	anaerobe
[Ref.: #61685]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.531

[Ref.: #28954]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %97
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

[Ref.: #67770]	Observation	quinones: MK-6, MMK-6
[Ref.: #67771]	Observation	quinones: MK-6, MMK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite
[Ref.: #68380]		indole ChEBI	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #28954]	acid phosphatase	+	3.1.3.2
[Ref.: #28954]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #15533]	11093	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	+/-	+/-	-	+/-	+/-	+/-	+/-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15533]	Sample type/isolated from	human faeces (healthy Japanese adult)
[Ref.: #15533]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #15533]	Country	Japan
[Ref.: #15533]	Country ISO 3 Code	JPN
[Ref.: #15533]	Continent	Asia

[Ref.: #61685]	Sample type/isolated from	Human feces
[Ref.: #61685]	Sampling date	2007
[Ref.: #61685]	Country	Japan
[Ref.: #61685]	Country ISO 3 Code	JPN
[Ref.: #61685]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human feces

[Ref.: #67771]	Sample type/isolated from	From human faeces, healthy Japanese adult
[Ref.: #67771]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_041667 (>99% sequence identity) for Parasutterella excrementihominis subclade from Microbeatlas

Aquatic Samples	1697
Soil Samples	358
Animal Samples	91146
Plant Samples	232
Total Samples	93433

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15533]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15533]	Parasutterella excrementihominis gene for 16S ribosomal RNA, partial sequence	AB370250	1494	ENA	762966 tax ID
[Ref.: #67771]	Parasutterella excrementihominis strain YIT 11859 16S ribosomal RNA, partial sequence	NR_041667	1494	GenBank	487175 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Parasutterella excrementihominis YIT 11859 YIT 11859	GCA_000205025	scaffold	GenBank	762966 tax ID
[Ref.: #66792]	Parasutterella excrementihominis YIT 11859	762966.3	wgs	PATRIC	762966 tax ID	*
[Ref.: #66792]	Parasutterella excrementihominis YIT 11859	651324084	draft	JGI IMG/M	762966 tax ID	*

[Ref.: #15533]	GC-content	49.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #28954]	GC-content	49.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Parasutterella excrementihominis YIT 11859 YIT 11859 NCBI: GCA_000205025.1
[Ref.: #69480]	gram-positive	no	99.999	no
[Ref.: #69480]	anaerobic	yes	99.531	yes
[Ref.: #69480]	spore-forming	no	99.997	yes
[Ref.: #69480]	thermophile	no	99.479	no
[Ref.: #69480]	motile	no	87.425	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Parasutterella excrementihominis YIT 11859 YIT 11859 NCBI: GCA_000205025.1
[Ref.: #69481]	spore-forming	no	97	no

Availability in culture collections External links

[Ref.: #15533]

Culture collection no.

CCUG 58418, JCM 15078, DSM 21040, KCTC 15162, YIT 11859, CIP 110024

[Ref.: #20218]

Associated Passport(s) in StrainInfo

843302, 843301

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Parasutterella excrementihominis gen. nov., sp. nov., a member of the family Alcaligenaceae isolated from human faeces.	Nagai F, Morotomi M, Sakon H, Tanaka R	Int J Syst Evol Microbiol	10.1099/ijs.0.002519-0	2009	*

References

#15533

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21040

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#28954

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25392 (see below)

#61685 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58418

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#25392

IJSEM 1793 2009 ( DOI 10.1099/ijs.0.002519-0 , PubMed 19542131 )

* These data were automatically processed and therefore are not curated

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Parasutterella excrementihominis YIT 11859 YIT 11859

Parasutterella excrementihominis YIT 11859 YIT 11859

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