Parasutterella excrementihominis CCUG 58418 is an anaerobe, mesophilic, Gram-negative prokaryote that was isolated from human faeces .
Gram-negative ovoid-shaped anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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Last LPSN update
2026-02-09 11:22:19 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Betaproteobacteria |
| Order Burkholderiales |
| Family Sutterellaceae |
| Genus Parasutterella |
| Species Parasutterella excrementihominis |
| Full scientific name Parasutterella excrementihominis Nagai et al. 2009 |
| BacDive ID | Other strains from Parasutterella excrementihominis (1) | Type strain |
|---|---|---|
| 169621 | P. excrementihominis CLA-SR-150, DSM 111000 (type strain) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 15533 | BTU MEDIUM (DSMZ Medium 413) | Medium recipe at MediaDive  | Name: BTU MEDIUM (DSMZ Medium 413) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l Na-formiate 1.8 g/l Na-fumarate 1.8 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Resazurin 0.001 g/l Vitamin K1 NaOH Distilled water |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68380 | 16024 ChEBI | D-mannose | - | fermentation | from API rID32A |
| 68380 | 29985 ChEBI | L-glutamate | - | degradation | from API rID32A |
| 68380 | 17632 ChEBI | nitrate | - | reduction | from API rID32A |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
| @ref | Chebi-ID | Metabolite | Production | |
|---|---|---|---|---|
| 68380 | 35581 ChEBI | indole | from API rID32A |
| @ref | Chebi-ID | Metabolite | Indole test | |
|---|---|---|---|---|
| 68380 | 35581 ChEBI | indole | - | from API rID32A |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 28954 | acid phosphatase | + | 3.1.3.2 | |
| 28954 | alkaline phosphatase | + | 3.1.3.1 | |
| 68380 | alkaline phosphatase | - | 3.1.3.1 | from API rID32A |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68380 | alpha-fucosidase | - | 3.2.1.51 | from API rID32A |
| 68380 | alpha-galactosidase | - | 3.2.1.22 | from API rID32A |
| 68380 | alpha-glucosidase | - | 3.2.1.20 | from API rID32A |
| 68380 | beta-galactosidase | - | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68380 | beta-glucosidase | - | 3.2.1.21 | from API rID32A |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 | from API rID32A |
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | leucyl glycin arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32A |
| 68380 | proline-arylamidase | - | 3.4.11.5 | from API rID32A |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68380 | serine arylamidase | - | from API rID32A | |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
| @ref | URE | ADH (Arg) | alpha GAL | beta GAL | beta-Galactosidase 6-phosphatebeta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta-N-Acetyl-beta-glucosaminidasebeta NAG | MNE | RAF | GDC | alpha FUC | Reduction of nitrateNIT | IND | PAL | L-arginine arylamidaseArgA | ProA | LGA | Phenylalanine arylamidasePheA | Leucine arylamidaseLeuA | PyrA | Tyrosine arylamidaseTyrA | Alanine arylamidaseAlaA | Glycin arylamidaseGlyA | Histidine arylamidaseHisA | Glutamyl-glutamate arylamidaseGGA | Serine arylamidaseSerA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15533 | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | +/- | +/- | - | +/- | +/- | +/- | +/- | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | - | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Global distribution of 16S sequence NR_041667 (>99% sequence identity) for Parasutterella excrementihominis subclade from Microbeatlas 
 Aquatic Samples |
1697 |
 Soil Samples |
358 |
 Animal Samples |
91146 |
 Plant Samples |
232 |
| Total Samples | 93433 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67771 | ASM20502v1 assembly for Parasutterella excrementihominis YIT 11859 | scaffold | GCA_000205025   | 762966.3  | 651324084  | 762966 | 55.86 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Pathogenicity | The direct and indirect inhibition of proinflammatory adipose tissue macrophages by acarbose in diet-induced obesity. | Li X, Zheng S, Xu H, Zhang Z, Han X, Wei Y, Jin H, Du X, Xu H, Li M, Zhang Z, Wang S, Sun G, Zhang D. | Cell Rep Med | 10.1016/j.xcrm.2024.101883 | 2025 | |
| Clostridium butyricum-altered lung microbiome is associated with enhanced anti-influenza effects via G-protein-coupled receptor120. | Hagihara M, Yamashita M, Ariyoshi T, Minemura A, Yoshida C, Higashi S, Oka K, Takahashi M, Ota A, Maenaka A, Iwasaki K, Hirai J, Shibata Y, Umemura T, Mori T, Kato H, Asai N, Mikamo H. | iScience | 10.1016/j.isci.2025.113502 | 2025 | | |
| Pathogenicity | Multifactorial effects of probiotic Parasutterella excrementihominis on gestational inflammation, offspring behaviour and prenatal-stress induced disruptions in tryptophan metabolism. | Galley JD, Rajasekera TA, Bennouna DJ, Batabyal A, Verosky B, Woodke S, Stokes J, Brown AK, Murthy S, Kopec RE, Gur TL. | Benef Microbes | 10.1163/18762891-bja00047 | 2024 | |
| Cultivation | MediaMatch: Prediction of Bacterial Growth on Different Culture Media Using the XGBoost Algorithm. | Liu J, Xu G, Liu W, Liu T, Li Y, Tu T, Luo H, Wu N, Yao B, Tian J, Zhang J, Guan F. | Microb Biotechnol | 10.1111/1751-7915.70245 | 2025 | |
| Genetics | Gut microbiome, and immune cells mediated effect on depression: A two-step, two-sample Mendelian randomization analysis. | Chen C, Zhang D, Wu D, Chen F, Li Z, Hu Y. | Exp Gerontol | 10.1016/j.exger.2024.112530 | 2024 | |
| Exploring the role of gut microbiota in rheumatoid arthritis: the effects of diet and drug supplementation. | Genc DE, Ozbek O, Ulgen KO. | BMC Rheumatol | 10.1186/s41927-025-00541-8 | 2025 | | |
| Ginkgo biloba extract protects against depression-like behavior in mice through regulating gut microbial bile acid metabolism. | Zhou J, Fan Q, Cai X, Zhang Y, Hou Y, Cao S, Li Z, Feng M, Wang Q, Zhang J, Wang G, Zheng X, Hao H. | Chin J Nat Med | 10.1016/s1875-5364(23)60496-0 | 2023 | | |
| Metabolism | Unraveling the interplay between mesenchymal stem cells, gut microbiota, and systemic sclerosis: therapeutic implications. | Zhang L, Wang H, Zhao L, Zhang J, Sun W, Chu J, Zhao H, Yang C, Yan S, Chen X, Xu D. | Microbiol Spectr | 10.1128/spectrum.01576-24 | 2025 | |
| Gut microbiota is associated with persistence of longer-term BNT162b2 vaccine immunogenicity. | Ng HY, Liao Y, Cheung CL, Zhang R, Chan KH, Seto WK, Leung WK, Hung IFN, Lam TTY, Cheung KS. | Front Immunol | 10.3389/fimmu.2025.1534787 | 2025 | | |
| Pathogenicity | Potential roles of the interactions between gut microbiota and metabolites in LPS-induced intrauterine inflammation (IUI) and associated preterm birth (PTB). | Jia B, Tang L, Liu H, Chen W, Chen Q, Zhong M, Yin A. | J Transl Med | 10.1186/s12967-023-04603-8 | 2024 | |
| Pathogenicity | Multiomics Integration Reveals Microbial Gene Interactions Shaping Host Responses in a DSS-Induced Colitis Mouse Model. | Hong HH, Lee SY, Jang DH, Ju SE, Shim JE, Kim TH, Kang HS, Kim SM. | J Microbiol Biotechnol | 10.4014/jmb.2507.07010 | 2025 | |
| Gut microbiota mediates the pro-pyroptosis effect of xierezhuyubuxu decoction in hepatocellular carcinoma. | Zeng Z, Feng M, He F, Zhang E, Li X, Cao Z. | Front Microbiol | 10.3389/fmicb.2024.1481111 | 2024 | | |
| Distinct anal microbiome is correlated with anal cancer precursors in MSM with HIV. | Brickman CE, Agnello M, Imam N, Camejo P, Pino R, Carroll LN, Chein A, Palefsky JM. | AIDS | 10.1097/qad.0000000000003920 | 2024 | | |
| Roles of Gut Microbiota and Associated Metabolites in Clostridioides difficile Infection. | Gao Y, Ma J, Wang K, Ma K, Zhao W, Su J, Ma L. | Pol J Microbiol | 10.33073/pjm-2025-017 | 2025 | | |
| Can physical exercise modify intestinal integrity and gut microbiota composition? A systematic review of in vivo studies. | Pereira SMS, Jose VPBS, da Silva A, Martins KVC, Leite LB, Forte P, Natali AJ, Martino HSD, Lucia CMD, Bressan J. | Biol Sport | 10.5114/biolsport.2025.148545 | 2025 | | |
| Metabolism | Gut microbiome association with brain imaging markers, APOE genotype, calcium and vegetable intakes, and obesity in healthy aging adults. | Hammond TC, Green SJ, Jacobs Y, Chlipala GE, Xing X, Heil S, Chen A, Aware C, Flemister A, Stromberg A, Balchandani P, Lin AL. | Front Aging Neurosci | 10.3389/fnagi.2023.1227203 | 2023 | |
| Gut microbiota and risk of iron deficiency anemia: A two-sample Mendelian randomization study. | Lei W, Liu Z, Lai HP, Fu R. | Medicine (Baltimore) | 10.1097/md.0000000000041617 | 2025 | | |
| Genetics | Anti-Hyperuricemic Effect of Anserine Based on the Gut-Kidney Axis: Integrated Analysis of Metagenomics and Metabolomics. | Halimulati M, Wang R, Aihemaitijiang S, Huang X, Ye C, Zhang Z, Li L, Zhu W, Zhang Z, He L. | Nutrients | 10.3390/nu15040969 | 2023 | |
| Genetics | Study of the intestinal microbiota composition and the effect of treatment with intensive chemotherapy in patients recovered from acute leukemia. | Vazquez X, Lumbreras-Iglesias P, Rodicio MR, Fernandez J, Bernal T, Moreno AF, de Ugarriza PL, Fernandez-Verdugo A, Margolles A, Sabater C. | Sci Rep | 10.1038/s41598-024-56054-w | 2024 | |
| Phylogeny | Identifying fecal microbiota signatures of colorectal cancer in a Vietnamese cohort. | Nhung PTT, Le HTT, Nguyen QH, Huyen DT, Quyen DV, Song LH, Van Thuan T, Tran TTT. | Front Microbiol | 10.3389/fmicb.2024.1388740 | 2024 | |
| Sodium butyrate alleviates R97-116 peptide-induced myasthenia gravis in mice by improving the gut microbiota and modulating immune response. | Sun J, Chen J, Xie Q, Sun M, Zhang W, Wang H, Liu N, Wang Q, Wang M. | J Inflamm (Lond) | 10.1186/s12950-023-00363-w | 2023 | | |
| IRAK4 is an immunological checkpoint in neuropsychiatric systemic lupus erythematosus. | Menoret A, Agliano F, Karginov TA, Hu X, Vella AT. | Sci Rep | 10.1038/s41598-024-63567-x | 2024 | | |
| A dietary carbohydrate - gut Parasutterella - human fatty acid biosynthesis metabolic axis in obesity and type 2 diabetes. | Henneke L, Schlicht K, Andreani NA, Hollstein T, Demetrowitsch T, Knappe C, Hartmann K, Jensen-Kroll J, Rohmann N, Pohlschneider D, Geisler C, Schulte DM, Settgast U, Turk K, Zimmermann J, Kaleta C, Baines JF, Shearer J, Shah S, Shen-Tu G, Schwarz K, Franke A, Schreiber S, Laudes M. | Gut Microbes | 10.1080/19490976.2022.2057778 | 2022 | | |
| Fecal or bacterial transplantation in mice transfer environment-induced brain plasticity and associated behavioral changes. | Marrocco F, Khan R, Reccagni A, Lin X, Delli Carpini M, Iebba V, D'Alessandro G, Limatola C. | Front Physiol | 10.3389/fphys.2025.1572854 | 2025 | | |
| Phylogeny | A Comparative Assessment of Flaxseed (Linum usitatissimum L.) and Chia Seed (Salvia hispanica L.) in Modulating Fecal Microbiota Composition and Function In Vitro. | Arioglu-Tuncil S. | Food Sci Nutr | 10.1002/fsn3.70243 | 2025 | |
| Bifidobacterium adolescentis CCFM1447 effectively alleviates osteoporosis by enriching intestinal flora capable of vitamin D conversion. | Yu X, Tian G, Wang Y, Li L, Huang L, Zhao Y, Feng L, Zhao Y, Fang H, Lu W, Lu S, Wang H. | Front Nutr | 10.3389/fnut.2025.1647671 | 2025 | | |
| The gut microbiome in social anxiety disorder: evidence of altered composition and function. | Butler MI, Bastiaanssen TFS, Long-Smith C, Morkl S, Berding K, Ritz NL, Strain C, Patangia D, Patel S, Stanton C, O'Mahony SM, Cryan JF, Clarke G, Dinan TG. | Transl Psychiatry | 10.1038/s41398-023-02325-5 | 2023 | | |
| The Role of the Intestinal Flora and Its Derivatives in Neurocognitive Disorders: A Narrative Review from Surgical Perspective. | Huang J, Qin TS, Bo Y, Li YJ, Liu RS, Yu Y, Li XD, He JC, Ma AX, Tao DP, Ren WJ, Peng J. | Mol Neurobiol | 10.1007/s12035-024-04322-1 | 2025 | | |
| Identification of the Intestinal Microbes Associated with Locomotion. | Ahn JS, Choi YJ, Kim HB, Chung HJ, Hong ST. | Int J Mol Sci | 10.3390/ijms241411392 | 2023 | | |
| Mendelian randomization study revealed a gut microbiota-immune system-kidney junction axis in chronic kidney disease. | Tan J, Xiong Z, Yu S, Lu W, Yu L. | Sci Rep | 10.1038/s41598-025-05941-x | 2025 | | |
| The Association between Gut Microbiome and Pregnancy-Induced Hypertension: A Nested Case-Control Study. | Lin H, Chen J, Ma S, An R, Li X, Tan H. | Nutrients | 10.3390/nu14214582 | 2022 | | |
| Immunomodulatory Role of Vitamin D on Gut Microbiome in Children. | Tabassum A, Ali A, Zahedi FD, Ismail NAS. | Biomedicines | 10.3390/biomedicines11051441 | 2023 | | |
| Improving CRISPR-Cas9 Genome Editing Efficiency by Fusion with Chromatin-Modulating Peptides. | Ding X, Seebeck T, Feng Y, Jiang Y, Davis GD, Chen F. | CRISPR J | 10.1089/crispr.2018.0036 | 2019 | | |
| Polysaccharide from Smilax glabra Roxb Mitigates Intestinal Mucosal Damage by Therapeutically Restoring the Interactions between Gut Microbiota and Innate Immune Functions. | Abaidullah M, La S, Liu M, Liu B, Cui Y, Wang Z, Sun H, Ma S, Shi Y. | Nutrients | 10.3390/nu15194102 | 2023 | | |
| Metabolism | Roseburia hominis enriched by baicalin reverses the non-response to metformin via upregulating linolenic acid metabolism. | Miao Z, Long J, Huang B, Yan D, Wang A. | iScience | 10.1016/j.isci.2025.113892 | 2025 | |
| Genetics | A metagenome-wide association study of gut microbiota in hepatitis B virus-related cirrhosis in northwest China. | Feng M, Chai Y, Li J, Wang Q, Zhang D. | Front Genet | 10.3389/fgene.2025.1619911 | 2025 | |
| Enterotype-stratified gut microbial signatures in MASLD and cirrhosis based on integrated microbiome data. | Yuan H, Zhou J, Wu X, Wang S, Park S. | Front Microbiol | 10.3389/fmicb.2025.1568672 | 2025 | | |
| Pathogenicity | Heat-Killed Bifidobacterium bifidum B1628 May Alleviate Dextran Sulfate Sodium-Induced Colitis in Mice, and the Anti-Inflammatory Effect Is Associated with Gut Microbiota Modulation. | Feng C, Zhang W, Zhang T, He Q, Kwok LY, Tan Y, Zhang H. | Nutrients | 10.3390/nu14245233 | 2022 | |
| Effect of the gut microbiome, skin microbiome, plasma metabolome, white blood cells subtype, immune cells, inflammatory proteins, and inflammatory cytokines on asthma: a two-sample Mendelian randomized study and mediation analysis. | Guo W, Hong E, Ma H, Wang J, Wang Q. | Front Immunol | 10.3389/fimmu.2025.1436888 | 2025 | | |
| Temporal network analysis of gut microbiota unveils aging trajectories associated with colon cancer. | Chen Z, Zhang Z, Nie BN, Huang W, Zhu Y, Zhang L, Xu M, Wang M, Yuan C, Liu N, Wang X, Tian J, Ba Q, Wang Z. | mSystems | 10.1128/msystems.01188-24 | 2025 | | |
| Comparison of naturalization mouse model setups uncover distinct effects on intestinal mucosa depending on microbial experience. | Arnesen H, Birkeland S, Stendahl H, Neuhaus K, Masopust D, Boysen P, Carlsen H. | Discov Immunol | 10.1093/discim/kyaf002 | 2025 | | |
| Investigating Plasma Metabolomics and Gut Microbiota Changes Associated With Parkinson Disease: A Focus on Caffeine Metabolism. | Chen CC, Chiu JY, Tan AH, Toh TS, Lim SY, Tan EK, Pettersson S, Hsu CC, Liou JM, Wu MS, Hsu CL, Lin CH. | Neurology | 10.1212/wnl.0000000000213592 | 2025 | | |
| Gut microbiome determines therapeutic effects of OCA on NAFLD by modulating bile acid metabolism. | Liu J, Sun J, Yu J, Chen H, Zhang D, Zhang T, Ma Y, Zou C, Zhang Z, Ma L, Yu X. | NPJ Biofilms Microbiomes | 10.1038/s41522-023-00399-z | 2023 | | |
| Klebsiella pneumoniae employs a type VI secretion system to overcome microbiota-mediated colonization resistance. | Bray AS, Broberg CA, Hudson AW, Wu W, Nagpal RK, Islam M, Valencia-Bacca JD, Shahid F, Hernandez GE, Nutter NA, Walker KA, Bennett EF, Young TM, Barnes AJ, Ornelles DA, Miller VL, Zafar MA. | Nat Commun | 10.1038/s41467-025-56309-8 | 2025 | | |
| Pathogenicity | Multi-omics analysis revealing the interplay between gut microbiome and the host following opioid use. | Kolli U, Jalodia R, Moidunny S, Singh PK, Ban Y, Tao J, Cantu GN, Valdes E, Ramakrishnan S, Roy S. | Gut Microbes | 10.1080/19490976.2023.2246184 | 2023 | |
| Unveiling the connection between gut microbiome and metabolic health in individuals with chronic spinal cord injury. | Li J, Barnes S, Lefkowitz E, Yarar-Fisher C. | Physiol Genomics | 10.1152/physiolgenomics.00107.2023 | 2024 | | |
| Microbiome Alterations Driven by Trypanosoma cruzi Infection in Two Disjunctive Murine Models. | Castaneda S, Munoz M, Hotez PJ, Bottazzi ME, Paniz-Mondolfi AE, Jones KM, Mejia R, Poveda C, Ramirez JD. | Microbiol Spectr | 10.1128/spectrum.00199-23 | 2023 | | |
| Unique maternal immune and functional microbial profiles during prenatal stress. | Antonson AM, Evans MV, Galley JD, Chen HJ, Rajasekera TA, Lammers SM, Hale VL, Bailey MT, Gur TL. | Sci Rep | 10.1038/s41598-020-77265-x | 2020 | | |
| Microbial profiling of peri-implantitis compared to the periodontal microbiota in health and disease using 16S rRNA sequencing. | Kim HJ, Ahn DH, Yu Y, Han H, Kim SY, Joo JY, Chung J, Na HS, Lee JY. | J Periodontal Implant Sci | 10.5051/jpis.2202080104 | 2023 | | |
| Exploring the Microbial Peptides Derived from the Human Gut Microbiota to Regulate Class B GPCRS Using an In Silico Approach. | S S, Nayak P, Pal K. | ACS Omega | 10.1021/acsomega.5c03268 | 2025 | | |
| Phylogeny | Specific Gut Microbiome Signatures in Children with Cow's Milk Allergy. | Moriki D, Leon ED, Garcia-Gamero G, Jimenez-Hernandez N, Artacho A, Pons X, Koumpagioti D, Dinopoulos A, Papaevangelou V, Priftis KN, Douros K, Francino MP. | Nutrients | 10.3390/nu16162752 | 2024 | |
| Synergistic Effects of Probiotics and Lifestyle Interventions on Intestinal Microbiota Composition and Clinical Outcomes in Obese Adults. | Florencio GP, Xavier AR, Natal ACC, Sadoyama LP, Pena GDG, Menezes RP, Sadoyama Leal G, Patrizzi LJ, Roder DVDB. | Metabolites | 10.3390/metabo15020070 | 2025 | | |
| Effects of residual black wolfberry fruit on growth performance, rumen fermentation parameters, microflora and economic benefits of fattening sheep. | Hou L, Duan P, Yang Y, Shah AM, Li J, Xu C, Guo T. | Front Vet Sci | 10.3389/fvets.2024.1528126 | 2024 | | |
| Oral exposure to Staphylococcus aureus enterotoxin B could promote the Ovalbumin-induced food allergy by enhancing the activation of DCs and T cells. | Yuan J, Tong P, Meng X, Wu Y, Li X, Gao J, Chen H. | Front Immunol | 10.3389/fimmu.2023.1250458 | 2023 | | |
| Snapshot into the Type-2-Diabetes-Associated Microbiome of a Romanian Cohort. | Gradisteanu Pircalabioru G, Chifiriuc MC, Picu A, Petcu LM, Trandafir M, Savu O. | Int J Mol Sci | 10.3390/ijms232315023 | 2022 | | |
| Genetics | Multi-omics surveillance of antimicrobial resistance in the pig gut microbiome. | Guitart-Matas J, Vera-Ponce de Leon A, Pope PB, Hvidsten TR, Fraile L, Ballester M, Ramayo-Caldas Y, Migura-Garcia L. | Anim Microbiome | 10.1186/s42523-025-00418-8 | 2025 | |
| Characterization of the gut microbiota and fecal and blood metabolomes under various factors in urban children from Northwest China. | Yang Y, Chen J, Gao H, Cui M, Zhu M, Xiang X, Wang Q. | Front Cell Infect Microbiol | 10.3389/fcimb.2024.1374544 | 2024 | | |
| Pathogenicity | Structure analysis of human gut microbiota associated with single-celled gut protists using Next-Generation Sequencing of 16S and 18S rRNA genes. | Belkessa S, Pasolli E, Medrouh B, Berg RPKD, Andersen LO', Nielsen HV, Stensvold CR. | Comput Struct Biotechnol J | 10.1016/j.csbj.2025.06.006 | 2025 | |
| Genetics | Early microbial intervention reshapes phenotypes of newborn Bos taurus through metabolic regulations. | Shen Y, Li Y, Wu T, Dong Q, Deng Q, Liu L, Guo Y, Cao Y, Li Q, Shi J, Zou H, Jiao Y, Ding L, Li J, Gao Y, Hu S, Wang Y, Chen L. | Gigascience | 10.1093/gigascience/giad118 | 2024 | |
| Comparative effects of non-fermented and Lacticaseibacillus paracasei-fermented pomelo juice on gut microbiota composition and short-chain fatty acid production: An in vitro colonic model. | Balmori V, Marnpae M, Kamonsuwan K, Chusak C, Nungarlee U, Sivapornnukul P, Chanchaem P, Payungporn S, Charoensiddhi S, Suantawee T, Thilavech T, Adisakwattana S. | Food Chem X | 10.1016/j.fochx.2024.102041 | 2024 | | |
| Metabolism | In-depth multiomic characterization of the effects of obesity in high-fat diet-fed mice. | Li B, Chen J, Ou X, Liu X, Xu Z, Xiang X, Yang Y, Wang Q. | FEBS Open Bio | 10.1002/2211-5463.13788 | 2024 | |
| Dietary Protein and Fiber Affect Gut Microbiome and Treg/Th17 Commitment in Chronic Kidney Disease Mice. | Serrano M, Srivastava A, Buck G, Zhu B, Edupuganti L, Adegbulugbe E, Shankaranarayanan D, Kopp JB, Raj DS. | Am J Nephrol | 10.1159/000526957 | 2022 | | |
| Genetics | Differences in Gut Microbiome Composition between Senior Orienteering Athletes and Community-Dwelling Older Adults. | Fart F, Rajan SK, Wall R, Rangel I, Ganda-Mall JP, Tingo L, Brummer RJ, Repsilber D, Schoultz I, Lindqvist CM. | Nutrients | 10.3390/nu12092610 | 2020 | |
| Pathogenicity | CRISPR-Cas spacer acquisition is a rare event in human gut microbiome. | Zhang AN, Gaston JM, Cardenas P, Zhao S, Gu X, Alm EJ. | Cell Genom | 10.1016/j.xgen.2024.100725 | 2025 | |
| Short-Term Metformin Treatment Enriches Bacteroides dorei in an Obese Liver Steatosis Zucker Rat Model. | Robeson MS, Manna K, Randolph C, Byrum S, Hakkak R. | Front Microbiol | 10.3389/fmicb.2022.834776 | 2022 | | |
| Metabolism | Spatial analysis of murine microbiota and bile acid metabolism during amoxicillin treatment. | Beekman CN, Penumutchu S, Peterson R, Han G, Belenky M, Hasan MH, Belenky A, Beura LK, Belenky P. | Cell Rep | 10.1016/j.celrep.2024.114572 | 2024 | |
| Metabolism | Prenatal stress-induced disruptions in microbial and host tryptophan metabolism and transport. | Galley JD, Chen HJ, Antonson AM, Gur TL. | Behav Brain Res | 10.1016/j.bbr.2021.113471 | 2021 | |
| Genetics | Host genotype and exercise exhibit species-level selection for members of the gut bacterial communities in the mouse digestive system. | Dowden RA, McGuinness LR, Wisniewski PJ, Campbell SC, Guers JJ, Oydanich M, Vatner SF, Haggblom MM, Kerkhof LJ. | Sci Rep | 10.1038/s41598-020-65740-4 | 2020 | |
| Effects of Early Life Exposures to the Aryl Hydrocarbon Receptor Ligand TCDF on Gut Microbiota and Host Metabolic Homeostasis in C57BL/6J Mice. | Tian Y, Rimal B, Bisanz JE, Gui W, Wolfe TM, Koo I, Murray IA, Nettleford SK, Yokoyama S, Dong F, Koshkin S, Prabhu KS, Turnbaugh PJ, Walk ST, Perdew GH, Patterson AD. | Environ Health Perspect | 10.1289/ehp13356 | 2024 | | |
| Preventive effects of a nutraceutical mixture of berberine, citrus and apple extracts on metabolic disturbances in Zucker fatty rats. | Siliman Misha M, Destrumelle S, Le Jan D, Mansour NM, Fizanne L, Ouguerram K, Desfontis JC, Mallem MY. | PLoS One | 10.1371/journal.pone.0306783 | 2024 | | |
| Genetics | Microbiome Dysbiosis Shows Strong Association of Gut-Derived Altered Metabolomic Profile in Gulf War Chronic Multisymptom Illness Symptom Persistence Following Western Diet Feeding and Development of Obesity. | Bose D, Stebliankin V, Cickovski T, Saha P, Trivedi A, Roy S, More M, Tuteja A, Mathee K, Narasimhan G, Chatterjee S. | Int J Mol Sci | 10.3390/ijms24044245 | 2023 | |
| Steamed broccoli sprouts alleviate DSS-induced inflammation and retain gut microbial biogeography in mice. | Holman JM, Colucci L, Baudewyns D, Balkan J, Hunt T, Hunt B, Kinney M, Holcomb L, Stratigakis A, Chen G, Moses PL, Mawe GM, Zhang T, Li Y, Ishaq SL. | mSystems | 10.1128/msystems.00532-23 | 2023 | | |
| Uropathogenic Escherichia coli niche occupancy determines the effects of mucosal vaccine against FimH. | Santiago-Borges JM, Rosen AL, Hernandez-Leyva A, Tomera CP, Lint MA, Paharik AE, Vanyo V, Pinkner JS, Dodson KW, Chen SL, Hsieh CS, Hultgren SJ, Kau AL. | Cell Rep | 10.1016/j.celrep.2025.116077 | 2025 | | |
| Gut Microbiota Alterations from Three-Strain Yogurt Formulation Treatments in Slow-Transit Constipation. | Li XR, Liu CJ, Tang XD, Zhang HM, Luo YY, Zhang L, Yang E. | Can J Infect Dis Med Microbiol | 10.1155/2020/4583973 | 2020 | | |
| Pathogenicity | Immunomodulatory Effects of a Probiotic Mixture: Alleviating Colitis in a Mouse Model through Modulation of Cell Activation Markers and the Gut Microbiota. | Ryu HM, Islam SMS, Riaz B, Sayeed HM, Choi B, Sohn S. | Int J Mol Sci | 10.3390/ijms25168571 | 2024 | |
| Combination of Lactobacillus fermentum NS9 and aronia anthocyanidin extract alleviates sodium iodate-induced retina degeneration. | Xing Y, Liang S, Zhang L, Ni H, Zhang X, Wang J, Yang L, Song S, Li HH, Jia C, Jin F. | Sci Rep | 10.1038/s41598-023-34219-3 | 2023 | | |
| Pathogenicity | Oral iron supplementation after antibiotic exposure induces a deleterious recovery of the gut microbiota. | Cuisiniere T, Calve A, Fragoso G, Oliero M, Hajjar R, Gonzalez E, Santos MM. | BMC Microbiol | 10.1186/s12866-021-02320-0 | 2021 | |
| Pathogenicity | Fibroblast Growth Factor 19 Alters Bile Acids to Induce Dysbiosis in Mice With Alcohol-Induced Liver Disease. | Ferrell JM, Dilts M, Pokhrel S, Stahl Z, Boehme S, Wang X, Chiang JYL. | Cell Mol Gastroenterol Hepatol | 10.1016/j.jcmgh.2024.02.015 | 2024 | |
| Associations of gut microbiota with disease development, disease activity, and therapeutic effects in patients with systemic lupus erythematosus. | Nishio J, Sato H, Watanabe E, Masuoka H, Aoki K, Kawazoe M, Wakiya R, Yamada S, Muraoka S, Masuoka S, Hayashi T, Mizutani S, Yamada Z, Koshiba K, Irita I, Kanaji M, Furukawa K, Yajima N, Dobashi H, Hirose W, Ishii Y, Suda W, Nanki T. | Sci Rep | 10.1038/s41598-024-83835-0 | 2024 | | |
| Temporal response patterns of human gut microbiota to dietary fiber. | Lin X, Wang C, Liu B, Zhu Y, Zhai R, Zhang C. | Imeta | 10.1002/imt2.70046 | 2025 | | |
| Integrative analysis of single-cell RNA-seq and gut microbiome metabarcoding data elucidates macrophage dysfunction in mice with DSS-induced ulcerative colitis. | Hong D, Kim HK, Yang W, Yoon C, Kim M, Yang CS, Yoon S. | Commun Biol | 10.1038/s42003-024-06409-w | 2024 | | |
| Stress Response of Mesosutterella multiformis Mediated by Nitrate Reduction. | Ikeyama N, Ohkuma M, Sakamoto M. | Microorganisms | 10.3390/microorganisms8122003 | 2020 | | |
| Metabolism | Recent Origin of the Methacrylate Redox System in Geobacter sulfurreducens AM-1 through Horizontal Gene Transfer. | Arkhipova OV, Meer MV, Mikoulinskaia GV, Zakharova MV, Galushko AS, Akimenko VK, Kondrashov FA. | PLoS One | 10.1371/journal.pone.0125888 | 2015 | |
| Short-chain fatty acids promote the effect of environmental signals on the gut microbiome and metabolome in mice. | Marrocco F, Delli Carpini M, Garofalo S, Giampaoli O, De Felice E, Di Castro MA, Maggi L, Scavizzi F, Raspa M, Marini F, Tomassini A, Nicolosi R, Cason C, Trettel F, Miccheli A, Iebba V, D'Alessandro G, Limatola C. | Commun Biol | 10.1038/s42003-022-03468-9 | 2022 | | |
| Association between gut microbiota and gastrointestinal cancer: a two-sample bi-directional Mendelian randomization study. | Su Q, Jin C, Bo Z, Yang Y, Wang J, Wang J, Zhou J, Chen Y, Zeng H, Chen G, Wang Y. | Front Microbiol | 10.3389/fmicb.2023.1181328 | 2023 | | |
| Differences in Compositions of Oral and Fecal Microbiota between Patients with Obesity and Controls. | Stefura T, Zapala B, Gosiewski T, Skomarovska O, Dudek A, Pedziwiatr M, Major P. | Medicina (Kaunas) | 10.3390/medicina57070678 | 2021 | | |
| The effect of modulation of gut microbiome profile on radiation-induced carcinogenesis and survival. | Cook JA, Sowers AL, Choudhuri R, Gadisetti C, Edmondson EF, Gohain S, Krishna MC, Mitchell JB. | J Radiat Res | 10.1093/jrr/rrac062 | 2023 | | |
| Tetragenococcus halophilus Alleviates Intestinal Inflammation in Mice by Altering Gut Microbiota and Regulating Dendritic Cell Activation via CD83. | Islam SMS, Ryu HM, Sohn S. | Cells | 10.3390/cells11121903 | 2022 | | |
| Exploring Gut Microbiota and the Influence of Physical Activity Interventions on Overweight and Obese Children and Adolescents: A Systematic Review. | Morgado MC, Sousa M, Coelho AB, Costa JA, Seabra A. | Healthcare (Basel) | 10.3390/healthcare11172459 | 2023 | | |
| Influence of Intestinal Indigenous Microbiota on Intrafamilial Infection by Helicobacter pylori in Japan. | Osaki T, Zaman C, Yonezawa H, Lin Y, Okuda M, Nozaki E, Hojo F, Kurata S, Hanawa T, Kikuchi S, Kamiya S. | Front Immunol | 10.3389/fimmu.2018.00287 | 2018 | | |
| The contribution of maternal oral, vaginal, and gut microbiota to the developing offspring gut. | Russell AL, McAdams ZL, Donovan E, Seilhamer N, Siegrist M, Franklin CL, Ericsson AC. | Sci Rep | 10.1038/s41598-023-40703-7 | 2023 | | |
| Disruption of the intestinal clock drives dysbiosis and impaired barrier function in colorectal cancer. | Fellows RC, Chun SK, Larson N, Fortin BM, Mahieu AL, Song WA, Seldin MM, Pannunzio NR, Masri S. | Sci Adv | 10.1126/sciadv.ado1458 | 2024 | | |
| Modulation of the Gut Microbiota by the Plantaricin-Producing Lactiplantibacillus plantarum D13, Analysed in the DSS-Induced Colitis Mouse Model. | Butorac K, Novak J, Banic M, Lebos Pavunc A, Culjak N, Orsolic N, Odeh D, Perica J, Suskovic J, Kos B. | Int J Mol Sci | 10.3390/ijms242015322 | 2023 | | |
| Phylogeny | The Composition of Placental Microbiota and Its Association With Adverse Pregnancy Outcomes. | La X, Wang Y, Xiong X, Shen L, Chen W, Zhang L, Yang F, Cai X, Zheng H, Jiang H. | Front Microbiol | 10.3389/fmicb.2022.911852 | 2022 | |
| The Effect of Indole-3-Lactic Acid from Lactiplantibacillus plantarum ZJ316 on Human Intestinal Microbiota In Vitro. | Zhou Q, Xie Z, Wu D, Liu L, Shi Y, Li P, Gu Q. | Foods | 10.3390/foods11203302 | 2022 | | |
| The gut-microbiota-brain axis in a Spanish population in the aftermath of the COVID-19 pandemic: microbiota composition linked to anxiety, trauma, and depression profiles. | Malan-Muller S, Valles-Colomer M, Palomo T, Leza JC. | Gut Microbes | 10.1080/19490976.2022.2162306 | 2023 | | |
| Pathogenicity | Cinnamaldehyde Improves Metabolic Functions in Streptozotocin-Induced Diabetic Mice by Regulating Gut Microbiota. | Zhao H, Wu H, Duan M, Liu R, Zhu Q, Zhang K, Wang L. | Drug Des Devel Ther | 10.2147/dddt.s288011 | 2021 | |
| Formyl peptide receptor-1 (FPR1) represses intestinal oncogenesis. | Le Naour J, Montegut L, Pan Y, Scuderi SA, Cordier P, Joseph A, Sauvat A, Iebba V, Paillet J, Ferrere G, Brechard L, Mulot C, Dubourg G, Zitvogel L, Pol JG, Vacchelli E, Puig PL, Kroemer G. | Oncoimmunology | 10.1080/2162402x.2023.2237354 | 2023 | | |
| The science behind TCM and Gut microbiota interaction-their combinatorial approach holds promising therapeutic applications. | Xia W, Liu B, Tang S, Yasir M, Khan I. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.875513 | 2022 | | |
| Hypergravity disrupts murine intestinal microbiota. | Alauzet C, Cunat L, Wack M, Lozniewski A, Busby H, Agrinier N, Cailliez-Grimal C, Frippiat JP. | Sci Rep | 10.1038/s41598-019-45153-8 | 2019 | | |
| Alterations in the vaginal microbiota of patients with preterm premature rupture of membranes. | Yan C, Hong F, Xin G, Duan S, Deng X, Xu Y. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.858732 | 2022 | | |
| Short- and Branched-Chain Fatty Acids as Fecal Markers for Microbiota Activity in Vegans and Omnivores. | Trefflich I, Dietrich S, Braune A, Abraham K, Weikert C. | Nutrients | 10.3390/nu13061808 | 2021 | | |
| Phylogeny | Microbial community analysis and identification of alternative host-specific fecal indicators in fecal and river water samples using pyrosequencing. | Jeong JY, Park HD, Lee KH, Weon HY, Ka JO. | J Microbiol | 10.1007/s12275-011-0530-6 | 2011 | |
| Metabolism | Beneficial metabolic effects of PAHSAs depend on the gut microbiota in diet-induced obese mice but not in chow-fed mice. | Lee J, Wellenstein K, Rahnavard A, Nelson AT, Holter MM, Cummings BP, Yeliseyev V, Castoldi A, Clish CB, Bry L, Siegel D, Kahn BB. | Proc Natl Acad Sci U S A | 10.1073/pnas.2318691121 | 2024 | |
| Gut Microbiota Targeted Approach in the Management of Chronic Liver Diseases. | Liu J, Yang D, Wang X, Asare PT, Zhang Q, Na L, Shao L. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.774335 | 2022 | | |
| Genetics | Reproducible and opposing gut microbiome signatures distinguish autoimmune diseases and cancers: a systematic review and meta-analysis. | Islam MZ, Tran M, Xu T, Tierney BT, Patel C, Kostic AD. | Microbiome | 10.1186/s40168-022-01373-1 | 2022 | |
| Gut microbiome composition and metabolic activity in women with diverticulitis. | Ma W, Wang Y, Nguyen LH, Mehta RS, Ha J, Bhosle A, Mclver LJ, Song M, Clish CB, Strate LL, Huttenhower C, Chan AT. | Nat Commun | 10.1038/s41467-024-47859-4 | 2024 | | |
| Genetics | Consistent Stool Metagenomic Biomarkers Associated with the Response To Melanoma Immunotherapy. | Olekhnovich EI, Ivanov AB, Babkina AA, Sokolov AA, Ulyantsev VI, Fedorov DE, Ilina EN. | mSystems | 10.1128/msystems.01023-22 | 2023 | |
| Transcriptome | The fecal microbiota of patients with primary biliary cholangitis (PBC) causes PBC-like liver lesions in mice and exacerbates liver damage in a mouse model of PBC. | Jiang H, Yu Y, Hu X, Du B, Shao Y, Wang F, Chen L, Yan R, Li L, Lv L. | Gut Microbes | 10.1080/19490976.2024.2383353 | 2024 | |
| MS-20 enhances the gut microbiota-associated antitumor effects of anti-PD1 antibody. | Lee PJ, Hung CM, Yang AJ, Hou CY, Chou HW, Chang YC, Chu WC, Huang WY, Kuo WC, Yang CC, Lin KI, Hung KH, Chang LC, Lee KY, Kuo HP, Lu KM, Lai HC, Kuo ML, Chen WJ. | Gut Microbes | 10.1080/19490976.2024.2380061 | 2024 | | |
| Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children. | Bonham KS, Fahur Bottino G, McCann SH, Beauchemin J, Weisse E, Barry F, Cano Lorente R, RESONANCE Consortium, Huttenhower C, Bruchhage M, D'Sa V, Deoni S, Klepac-Ceraj V. | Sci Adv | 10.1126/sciadv.adi0497 | 2023 | | |
| Cftr deletion in mouse epithelial and immune cells differentially influence the intestinal microbiota. | Scull CE, Luo M, Jennings S, Taylor CM, Wang G. | Commun Biol | 10.1038/s42003-022-04101-5 | 2022 | | |
| Identification of robust and generalizable biomarkers for microbiome-based stratification in lifestyle interventions. | Chen J, Siliceo SL, Ni Y, Nielsen HB, Xu A, Panagiotou G. | Microbiome | 10.1186/s40168-023-01604-z | 2023 | | |
| Genetics | Comprehensive Functional Annotation of Metagenomes and Microbial Genomes Using a Deep Learning-Based Method. | Maranga M, Szczerbiak P, Bezshapkin V, Gligorijevic V, Chandler C, Bonneau R, Xavier RJ, Vatanen T, Kosciolek T. | mSystems | 10.1128/msystems.01178-22 | 2023 | |
| Gamma-delta T cells modulate the microbiota and fecal micro-RNAs to maintain mucosal tolerance. | Rezende RM, Cox LM, Moreira TG, Liu S, Boulenouar S, Dhang F, LeServe DS, Nakagaki BN, Lopes JR, Tatematsu BK, Lemos L, Mayrink J, Lobo ELC, Guo L, Oliveira MG, Kuhn C, Weiner HL. | Microbiome | 10.1186/s40168-023-01478-1 | 2023 | | |
| Gut microbiota-mediated associations of green tea and catechin intakes with glucose metabolism in individuals without type 2 diabetes mellitus: a four-season observational study with mediation analysis. | Ito A, Matsui Y, Takeshita M, Katashima M, Goto C, Kuriki K. | Arch Microbiol | 10.1007/s00203-023-03522-y | 2023 | | |
| Lactobacillus casei Zhang exerts probiotic effects to antibiotic-treated rats. | Yao G, Cao C, Zhang M, Kwok LY, Zhang H, Zhang W. | Comput Struct Biotechnol J | 10.1016/j.csbj.2021.10.026 | 2021 | | |
| Metabolism | Lactobacillus casei Zhang and vitamin K2 prevent intestinal tumorigenesis in mice via adiponectin-elevated different signaling pathways. | Zhang Y, Ma C, Zhao J, Xu H, Hou Q, Zhang H. | Oncotarget | 10.18632/oncotarget.15791 | 2017 | |
| The Effects of Physical Activity on the Gut Microbiota and the Gut-Brain Axis in Preclinical and Human Models: A Narrative Review. | Cataldi S, Poli L, Sahin FN, Patti A, Santacroce L, Bianco A, Greco G, Ghinassi B, Di Baldassarre A, Fischetti F. | Nutrients | 10.3390/nu14163293 | 2022 | | |
| Phylogeny | Gut microbiota is associated with differential metabolic characteristics: A study on a defined cohort of Africans and Chinese. | Nizigiyimana P, Xu B, Liu L, Luo L, Liu T, Jiang M, Liu Z, Li C, Luo X, Lei M. | Front Endocrinol (Lausanne) | 10.3389/fendo.2022.942383 | 2022 | |
| A history of repeated antibiotic usage leads to microbiota-dependent mucus defects. | Krigul KL, Feeney RH, Wongkuna S, Aasmets O, Holmberg SM, Andreson R, Puertolas-Balint F, Pantiukh K, Sootak L, Org T, Tenson T, Org E, Schroeder BO. | Gut Microbes | 10.1080/19490976.2024.2377570 | 2024 | | |
| Genetics | Pooled analysis of 3,741 stool metagenomes from 18 cohorts for cross-stage and strain-level reproducible microbial biomarkers of colorectal cancer. | Piccinno G, Thompson KN, Manghi P, Ghazi AR, Thomas AM, Blanco-Miguez A, Asnicar F, Mladenovic K, Pinto F, Armanini F, Puncochar M, Piperni E, Heidrich V, Fackelmann G, Ferrero G, Tarallo S, Nguyen LH, Yan Y, Keles NA, Tuna BG, Vymetalkova V, Trompetto M, Liska V, Hucl T, Vodicka P, Bencsikova B, Carnogurska M, Popovici V, Marmorino F, Cremolini C, Pardini B, Cordero F, Song M, Chan AT, Derosa L, Zitvogel L, Huttenhower C, Naccarati A, Budinska E, Segata N. | Nat Med | 10.1038/s41591-025-03693-9 | 2025 | |
| Computational approach to modeling microbiome landscapes associated with chronic human disease progression. | Li L, Sohn J, Genco RJ, Wactawski-Wende J, Goodison S, Diaz PI, Sun Y. | PLoS Comput Biol | 10.1371/journal.pcbi.1010373 | 2022 | | |
| Pathogenicity | Genomic evidence reveals the extreme diversity and wide distribution of the arsenic-related genes in Burkholderiales. | Li X, Zhang L, Wang G. | PLoS One | 10.1371/journal.pone.0092236 | 2014 | |
| Targeting gut microbiota-derived kynurenine to predict and protect the remodeling of the pressure-overloaded young heart. | Shi B, Zhang X, Song Z, Dai Z, Luo K, Chen B, Zhou Z, Cui Y, Feng B, Zhu Z, Zheng J, Zhang H, He X. | Sci Adv | 10.1126/sciadv.adg7417 | 2023 | | |
| Phylogeny | Mucin-degrading gut commensals isolated from healthy faecal donor suppress intestinal epithelial inflammation and regulate tight junction barrier function. | Pan M, Barua N, Ip M. | Front Immunol | 10.3389/fimmu.2022.1021094 | 2022 | |
| Single-cell transcriptomics unveiled that early life BDE-99 exposure reprogrammed the gut-liver axis to promote a proinflammatory metabolic signature in male mice at late adulthood. | Lim JJ, Goedken M, Jin Y, Gu H, Cui JY. | Toxicol Sci | 10.1093/toxsci/kfae047 | 2024 | | |
| Influence of the densities and nutritional components of bacterial colonies on the culture-enriched gut bacterial community structure. | Gu Y, Yan D, Wu M, Li M, Li P, Wang J, Chang Y, Yang F, Di S, Ni S, Yang M, Liu J. | AMB Express | 10.1186/s13568-021-01240-6 | 2021 | | |
| Zearalenone-14-glucoside specifically promotes dysplasia of Gut-Associated Lymphoid Tissue: A natural product for constructing intestinal nodular lymphatic hyperplasia model. | Ruan H, Wang Y, Zhang J, Huang Y, Yang Y, Wu C, Guo M, Luo J, Yang M. | J Adv Res | 10.1016/j.jare.2023.05.006 | 2023 | | |
| Human Fecal Microbiota Transplantation Reduces the Susceptibility to Dextran Sulfate Sodium-Induced Germ-Free Mouse Colitis. | Yang Y, Zheng X, Wang Y, Tan X, Zou H, Feng S, Zhang H, Zhang Z, He J, Cui B, Zhang X, Wu Z, Dong M, Cheng W, Tao S, Wei H. | Front Immunol | 10.3389/fimmu.2022.836542 | 2022 | | |
| Metabolism | New Arsenate Reductase Gene (arrA) PCR Primers for Diversity Assessment and Quantification in Environmental Samples. | Mirza BS, Sorensen DL, Dupont RR, McLean JE. | Appl Environ Microbiol | 10.1128/aem.02725-16 | 2017 | |
| Genital Microbiota of Women From Six Ethnic Groups With and Without Human Papillomavirus Infection in Shangri-La, China. | Liu CJ, Xiao WY, Fang JF, Dong YH, Ye KF, He MP, Wang YS, Li X, Zhao ZM, Yuan T, Zhao T, He CY, Zhang SM, Yang E, Wu XM, Li XR. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.935068 | 2022 | | |
| Potential interaction between timing of infant complementary feeding and breastfeeding duration in determination of early childhood gut microbiota composition and BMI. | Differding MK, Doyon M, Bouchard L, Perron P, Guerin R, Asselin C, Masse E, Hivert MF, Mueller NT. | Pediatr Obes | 10.1111/ijpo.12642 | 2020 | | |
| Metabolism | Lycium b arbarum's diabetes secrets: A comprehensive review of cellular, molecular, and epigenetic targets with immune modulation and microbiome influence. | Ali Z, Ayub A, Lin Y, Anis S, Khan I, Younas S, Tahir RA, Wang S, Li J. | J Pharm Anal | 10.1016/j.jpha.2024.101130 | 2025 | |
| Phylogeny | Administration of two probiotic strains during early childhood does not affect the endogenous gut microbiota composition despite probiotic proliferation. | Laursen MF, Laursen RP, Larnkjaer A, Michaelsen KF, Bahl MI, Licht TR. | BMC Microbiol | 10.1186/s12866-017-1090-7 | 2017 | |
| Pathogenicity | The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut. | Wong EO, Brownlie EJE, Ng KM, Kathirgamanathan S, Yu FB, Merrill BD, Huang KC, Martin A, Tropini C, Navarre WW. | mBio | 10.1128/mbio.02949-21 | 2022 | |
| Pathogenicity | A Uniform Computational Approach Improved on Existing Pipelines to Reveal Microbiome Biomarkers of Nonresponse to Immune Checkpoint Inhibitors. | Shaikh FY, White JR, Gills JJ, Hakozaki T, Richard C, Routy B, Okuma Y, Usyk M, Pandey A, Weber JS, Ahn J, Lipson EJ, Naidoo J, Pardoll DM, Sears CL. | Clin Cancer Res | 10.1158/1078-0432.ccr-20-4834 | 2021 | |
| Genetics | Longitudinal fecal microbiome and metabolite data demonstrate rapid shifts and subsequent stabilization after an abrupt dietary change in healthy adult dogs. | Lin CY, Jha AR, Oba PM, Yotis SM, Shmalberg J, Honaker RW, Swanson KS. | Anim Microbiome | 10.1186/s42523-022-00194-9 | 2022 | |
| Gut OncoMicrobiome Signatures (GOMS) as next-generation biomarkers for cancer immunotherapy. | Thomas AM, Fidelle M, Routy B, Kroemer G, Wargo JA, Segata N, Zitvogel L. | Nat Rev Clin Oncol | 10.1038/s41571-023-00785-8 | 2023 | | |
| An adaptive AI-based virtual reality sports system for adolescents with excess body weight: a randomized controlled trial. | Wang J, Qin Y, Wu Q, Zeng D, Gao X, Wang Q, Li Z, Ni Y, Li H, Zhang P, Guo J, Ma W, Maitusun M, Jin X, Chen M, Zhu L, Lu Q, Chen Q, Wu Y, Lin C, Han R, Cheng D, Ni J, Wang X, Yao F, Zhuang J, Xia J, Liu D, Lu Y, Kang P, Yu S, Chen A, Zhang Y, Li Q, Ge W, Long X, Jiang Z, Guan Z, Jin Z, Jin P, Li T, Shu J, Yang J, Wang J, Jiang N, Qian J, Jung Y, Zhang H, Yang Q, Ma L, Wu X, Huang X, Si D, Ren J, Qiao H, Guo Y, Huang Z, Wang W, Deng W, Bi L, Zhao D, Li Y, Lau RWH, Tham YC, Ma X, Ma J, Shen D, Zhang S, Guan H, Zou W, Guo M, Guan X, Yang X, Xu A, Wu J, Panagiotou G, Tse MA, Kim J, Wu E, Thalmann D, Thalmann NM, Fregni F, Wong TY, Jia W, Zeng R, Lim CT, Sheng B, Li H. | Nat Med | 10.1038/s41591-025-03724-5 | 2025 | | |
| Phylogeny | Meta-Analysis of Fecal Microbiota and Metabolites in Experimental Colitic Mice during the Inflammatory and Healing Phases. | Osaka T, Moriyama E, Arai S, Date Y, Yagi J, Kikuchi J, Tsuneda S. | Nutrients | 10.3390/nu9121329 | 2017 | |
| Pathogenicity | Prebiotic-Induced Anti-tumor Immunity Attenuates Tumor Growth. | Li Y, Elmen L, Segota I, Xian Y, Tinoco R, Feng Y, Fujita Y, Segura Munoz RR, Schmaltz R, Bradley LM, Ramer-Tait A, Zarecki R, Long T, Peterson SN, Ronai ZA. | Cell Rep | 10.1016/j.celrep.2020.01.035 | 2020 | |
| Pathogenicity | Sodium oligomannate alters gut microbiota, reduces cerebral amyloidosis and reactive microglia in a sex-specific manner. | Bosch ME, Dodiya HB, Michalkiewicz J, Lee C, Shaik SM, Weigle IQ, Zhang C, Osborn J, Nambiar A, Patel P, Parhizkar S, Zhang X, Laury ML, Mondal P, Gomm A, Schipma MJ, Mallah D, Butovsky O, Chang EB, Tanzi RE, Gilbert JA, Holtzman DM, Sisodia SS. | Mol Neurodegener | 10.1186/s13024-023-00700-w | 2024 | |
| Btla signaling in conventional and regulatory lymphocytes coordinately tempers humoral immunity in the intestinal mucosa. | Stienne C, Virgen-Slane R, Elmen L, Veny M, Huang S, Nguyen J, Chappell E, Balmert MO, Shui JW, Hurchla MA, Kronenberg M, Peterson SN, Murphy KM, Ware CF, Sedy JR. | Cell Rep | 10.1016/j.celrep.2022.110553 | 2022 | | |
| Alterations of Gut Microbiome and Serum Metabolome in Coronary Artery Disease Patients Complicated With Non-alcoholic Fatty Liver Disease Are Associated With Adverse Cardiovascular Outcomes. | Hu X, Zhou R, Li H, Zhao X, Sun Y, Fan Y, Zhang S. | Front Cardiovasc Med | 10.3389/fcvm.2021.805812 | 2021 | | |
| Effects of Turmeric and Curcumin Dietary Supplementation on Human Gut Microbiota: A Double-Blind, Randomized, Placebo-Controlled Pilot Study. | Peterson CT, Vaughn AR, Sharma V, Chopra D, Mills PJ, Peterson SN, Sivamani RK. | J Evid Based Integr Med | 10.1177/2515690x18790725 | 2018 | | |
| Prebiotic Potential of Herbal Medicines Used in Digestive Health and Disease. | Peterson CT, Sharma V, Uchitel S, Denniston K, Chopra D, Mills PJ, Peterson SN. | J Altern Complement Med | 10.1089/acm.2017.0422 | 2018 | | |
| Integrated gut virome and bacteriome dynamics in COVID-19 patients. | Cao J, Wang C, Zhang Y, Lei G, Xu K, Zhao N, Lu J, Meng F, Yu L, Yan J, Bai C, Zhang S, Zhang N, Gong Y, Bi Y, Shi Y, Chen Z, Dai L, Wang J, Yang P. | Gut Microbes | 10.1080/19490976.2021.1887722 | 2021 | | |
| Fecal Enterobacteriales enrichment is associated with increased in vivo intestinal permeability in humans. | Pedersen C, Ijaz UZ, Gallagher E, Horton F, Ellis RJ, Jaiyeola E, Duparc T, Russell-Jones D, Hinton P, Cani PD, La Ragione RM, Robertson MD. | Physiol Rep | 10.14814/phy2.13649 | 2018 | | |
| Metabolism | High intensity interval training promotes total and visceral fat mass loss in obese Zucker rats without modulating gut microbiota. | Maillard F, Vazeille E, Sauvanet P, Sirvent P, Combaret L, Sourdrille A, Chavanelle V, Bonnet R, Otero YF, Delcros G, Barnich N, Boisseau N. | PLoS One | 10.1371/journal.pone.0214660 | 2019 | |
| Genetics | Gut bacterial profile in patients newly diagnosed with treatment-naïve Crohn's disease. | Ricanek P, Lothe SM, Frye SA, Rydning A, Vatn MH, Tonjum T. | Clin Exp Gastroenterol | 10.2147/ceg.s33858 | 2012 | |
| Distinctive Gut Microbiota Is Associated with Diarrheagenic Escherichia coli Infections in Chilean Children. | Gallardo P, Izquierdo M, Vidal RM, Chamorro-Veloso N, Rossello-Mora R, O'Ryan M, Farfan MJ. | Front Cell Infect Microbiol | 10.3389/fcimb.2017.00424 | 2017 | | |
| Impact of international travel and diarrhea on gut microbiome and resistome dynamics. | Boolchandani M, Blake KS, Tilley DH, Cabada MM, Schwartz DJ, Patel S, Morales ML, Meza R, Soto G, Isidean SD, Porter CK, Simons MP, Dantas G. | Nat Commun | 10.1038/s41467-022-34862-w | 2022 | | |
| Enzymology | Defining the role of Parasutterella, a previously uncharacterized member of the core gut microbiota. | Ju T, Kong JY, Stothard P, Willing BP. | ISME J | 10.1038/s41396-019-0364-5 | 2019 | |
| Evolutionary biologic changes of gut microbiota in an 'adenoma-carcinoma sequence' mouse colorectal cancer model induced by 1, 2-Dimethylhydrazine. | Sun T, Liu S, Zhou Y, Yao Z, Zhang D, Cao S, Wei Z, Tan B, Li Y, Lian Z, Wang S. | Oncotarget | 10.18632/oncotarget.13443 | 2017 | | |
| Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer. | Derosa L, Routy B, Thomas AM, Iebba V, Zalcman G, Friard S, Mazieres J, Audigier-Valette C, Moro-Sibilot D, Goldwasser F, Silva CAC, Terrisse S, Bonvalet M, Scherpereel A, Pegliasco H, Richard C, Ghiringhelli F, Elkrief A, Desilets A, Blanc-Durand F, Cumbo F, Blanco A, Boidot R, Chevrier S, Daillere R, Kroemer G, Alla L, Pons N, Le Chatelier E, Galleron N, Roume H, Dubuisson A, Bouchard N, Messaoudene M, Drubay D, Deutsch E, Barlesi F, Planchard D, Segata N, Martinez S, Zitvogel L, Soria JC, Besse B. | Nat Med | 10.1038/s41591-021-01655-5 | 2022 | | |
| Pathogenicity | A diet based on cured acorn-fed ham with oleic acid content promotes anti-inflammatory gut microbiota and prevents ulcerative colitis in an animal model. | Fernandez J, de la Fuente VG, Garcia MTF, Sanchez JG, Redondo BI, Villar CJ, Lombo F. | Lipids Health Dis | 10.1186/s12944-020-01205-x | 2020 | |
| Distinct Microbiome-Neuroimmune Signatures Correlate With Functional Abdominal Pain in Children With Autism Spectrum Disorder. | Luna RA, Oezguen N, Balderas M, Venkatachalam A, Runge JK, Versalovic J, Veenstra-VanderWeele J, Anderson GM, Savidge T, Williams KC. | Cell Mol Gastroenterol Hepatol | 10.1016/j.jcmgh.2016.11.008 | 2017 | | |
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| Metabolism | 16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics. | Peterson CT, Sharma V, Iablokov SN, Albayrak L, Khanipov K, Uchitel S, Chopra D, Mills PJ, Fofanov Y, Rodionov DA, Peterson SN. | PLoS One | 10.1371/journal.pone.0213869 | 2019 | |
| Fecal microbiota and metabolome of children with autism and pervasive developmental disorder not otherwise specified. | De Angelis M, Piccolo M, Vannini L, Siragusa S, De Giacomo A, Serrazzanetti DI, Cristofori F, Guerzoni ME, Gobbetti M, Francavilla R. | PLoS One | 10.1371/journal.pone.0076993 | 2013 | | |
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| Genetics | Dakarella massiliensis gen. nov., sp. nov., strain ND3T: a new bacterial genus isolated from the female genital tract. | Dione N, Rathored J, Tomei E, Lagier JC, Khelaifia S, Robert C, Bretelle F, Raoult D, Fournier PE, Fenollar F. | New Microbes New Infect | 10.1016/j.nmni.2017.05.003 | 2017 | |
| Phylogeny | Parasutterella secunda sp. nov., isolated from human faeces and proposal of Sutterellaceae fam. nov. in the order Burkholderiales. | Morotomi M, Nagai F, Watanabe Y. | Int J Syst Evol Microbiol | 10.1099/ijs.0.023556-0 | 2011 | |
| Phylogeny | Parasutterella excrementihominis gen. nov., sp. nov., a member of the family Alcaligenaceae isolated from human faeces. | Nagai F, Morotomi M, Sakon H, Tanaka R | Int J Syst Evol Microbiol | 10.1099/ijs.0.002519-0 | 2009 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive17830.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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