Name: Planosporangium mesophilum DSM 45475
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132122

Type strain:

Species: Planosporangium mesophilum

Culture col. no.: DSM 45475, BCC 51294, CCTCC AA 209049, KCTC 19779, TBRC 2212, YIM 48875, NBRC 109066

Strain history: <- S-K Tang, Yunnan Inst. Microbiol, China

NCBI tax ID(s): 689768 (species)

SI-ID 404076

DSM 45475

Section

Planosporangium mesophilum DSM 45475 is an aerobe, spore-forming, mesophilic bacterium that was isolated from From rhizosphere soil of `Bletilla striata`.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Planosporangium*
	Species	**Planosporangium mesophilum**
	Full Scientific Name (LPSN)	Planosporangium mesophilum Cao et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23912]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #23912]

Culture medium growth

[Ref.: #23912]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #23912]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #23912]

Culture medium growth

[Ref.: #23912]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #23912]			growth	28 °C
[Ref.: #67771]			growth	28 °C

[Ref.: #23912]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999

[Ref.: #67771]

Observation

quinones: MK-9(H4), MK-9(H6) MK-9(H8)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From rhizosphere soil of `Bletilla striata`
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #23912]	Sample type/isolated from	rhizosphere soil of Bletilla striata
[Ref.: #23912]	Host species	Bletilla striata
[Ref.: #23912]	Geographic location (country and/or sea, region)	Yunnan Province, Xishuangbanna
[Ref.: #23912]	Country	China
[Ref.: #23912]	Country ISO 3 Code	CHN
[Ref.: #23912]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23912]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23912]	Planosporangium mesophilum strain YIM 48875 16S ribosomal RNA gene, partial sequence	GU126491	1405	ENA	689768 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planosporangium mesophilum NBRC 109066	GCA_016863255	contig	GenBank	689768 tax ID	*
[Ref.: #66792]	Planosporangium mesophilum TBRC 2212	GCA_011947235	contig	GenBank	689768 tax ID	*
[Ref.: #66792]	Planosporangium mesophilum strain NBRC 109066	689768.4	wgs	PATRIC	689768 tax ID	*
[Ref.: #66792]	Planosporangium mesophilum strain TBRC 2212	689768.3	wgs	PATRIC	689768 tax ID	*

[Ref.: #23912]

GC-content

71.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Planosporangium mesophilum strain TBRC 2212 PATRIC: 689768.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planosporangium mesophilum strain NBRC 109066 PATRIC: 689768.4
[Ref.: #69480]	gram-positive	yes	84.089	yes
[Ref.: #69480]	anaerobic	no	98.432	yes
[Ref.: #69480]	halophile	no	97.183	no
[Ref.: #69480]	spore-forming	yes	89.638	no
[Ref.: #69480]	glucose-util	yes	87.85	no
[Ref.: #69480]	flagellated	no	93.121	no
[Ref.: #69480]	thermophile	no	93.45	yes
[Ref.: #69480]	motile	no	51.249	no
[Ref.: #69480]	aerobic	yes	90.767	yes
[Ref.: #69480]	glucose-ferment	no	90.897	no

Availability in culture collections External links

[Ref.: #23912]

Culture collection no.

DSM 45475, BCC 51294, CCTCC AA 209049, KCTC 19779, TBRC 2212, YIM 48875, NBRC 109066

[Ref.: #90478]

SI-ID 404076

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planosporangium mesophilum sp. nov., isolated from rhizosphere soil of Bletilla striata.	Cao YR, Wang Q, Jin RX, Jiang Y, Lai HX, He WX, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.026096-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23912

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45475

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90478

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404076.1 )

* These data were automatically processed and therefore are not curated

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Planosporangium mesophilum strain TBRC 2212

Planosporangium mesophilum strain NBRC 109066

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