Name: Flavobacterium psychroterrae P3922
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159751

Type strain:

Species: Flavobacterium psychroterrae

Strain Designation: P3922

Culture col. no.: LMG 30616, CCM 8827

NCBI tax ID(s): 2133767 (species)

Section

Flavobacterium psychroterrae P3922 is an aerobe, mesophilic, Gram-positive bacterium that has a yellow pigmentation and was isolated from stone fragment.

Gram-positive
motile
pigmented
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium psychroterrae**
	Full Scientific Name (LPSN)	Flavobacterium psychroterrae Králová et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66678]	Gram stain	positive
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #66678]	Cell length	1.6-4.5 µm

[Ref.: #66678]	Cell width	0.3-0.5 µm

[Ref.: #66678]	Cell shape	rod-shaped

[Ref.: #66678]	Motility	yes

[Ref.: #66678]	Flagellum arrangement	gliding

[Ref.: #66678]	Colony color	clear metallic sheen
[Ref.: #66678]	Cultivation medium used	Endo agar

[Ref.: #66678]	Pigment production	yes
[Ref.: #66678]	Pigmentation color	yellow
[Ref.: #66678]	Pigment name	flexirubin-type

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Endo agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

tryptic soy agar (TSA)

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #66678]		no	growth	35 °C
[Ref.: #66678]			growth	1-25 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #66678]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66678]	Oxygen tolerance	aerobe
[Ref.: #66678]	Oxygen tolerance	microaerophile

[Ref.: #66678]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66678]		NaCl		growth	1	%(w/v)
[Ref.: #66678]		NaCl	no	growth	2	%(w/v)

[Ref.: #66678]	Observation	Cells occur singly, occasionally in pairs or irregular clusters.
[Ref.: #66678]	Observation	Gliding motility present on R2A agar but no motility is observed by the hanging-drop technique.
[Ref.: #66678]	Observation	Filamentous structures up to 7.0 µm long can be formed.
[Ref.: #66678]	Observation	Presence of a capsule is negative.
[Ref.: #66678]	Observation	Glucose is not fermented to acid in OF test medium.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66678]	(R)-malic acid ChEBI	-	carbon source
[Ref.: #66678]	(S)-lactate ChEBI	-	carbon source
[Ref.: #66678]	(S)-malic acid ChEBI	-	carbon source
[Ref.: #66678]	1 % sodium lactate	-	carbon source
[Ref.: #66678]	2-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #66678]	2-oxobutanoate ChEBI	-	carbon source
[Ref.: #66678]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #66678]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #66678]	3-O-methyl-D-glucose ChEBI	-	carbon source
[Ref.: #66678]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #66678]	acetamide ChEBI	-	assimilation
[Ref.: #66678]	acetic acid ChEBI	+	carbon source
[Ref.: #66678]	acetoacetate ChEBI	-	carbon source
[Ref.: #66678]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #66678]	aztreonam ChEBI	-	carbon source
[Ref.: #66678]	bromosuccinate ChEBI	-	carbon source
[Ref.: #66678]	casein	+	hydrolysis
[Ref.: #66678]	cellobiose ChEBI	+	carbon source
[Ref.: #66678]	cellulose ChEBI	-	degradation
[Ref.: #66678]	citric acid ChEBI	-	assimilation
[Ref.: #66678]	citric acid ChEBI	-	carbon source
[Ref.: #66678]	D-arabitol ChEBI	-	carbon source
[Ref.: #66678]	D-aspartate ChEBI	-	carbon source
[Ref.: #66678]	D-fructose ChEBI	+	carbon source
[Ref.: #66678]	D-fructose 6-phosphate ChEBI	-	carbon source
[Ref.: #66678]	D-fucose ChEBI	-	carbon source
[Ref.: #66678]	D-galactose ChEBI	+	carbon source
[Ref.: #66678]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #66678]	D-glucarate ChEBI	-	carbon source
[Ref.: #66678]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #66678]	D-glucuronate ChEBI	-	carbon source
[Ref.: #66678]	D-mannitol ChEBI	-	carbon source
[Ref.: #66678]	D-mannose ChEBI	+	carbon source
[Ref.: #66678]	D-serine ChEBI	-	carbon source
[Ref.: #66678]	D-sorbitol ChEBI	-	carbon source
[Ref.: #66678]	D-trehalose ChEBI	+	carbon source
[Ref.: #66678]	dextrin ChEBI	+	carbon source
[Ref.: #66678]	dna ChEBI	+	hydrolysis
[Ref.: #66678]	esculin ChEBI	+	hydrolysis
[Ref.: #66678]	formate ChEBI	-	carbon source
[Ref.: #66678]	fructose ChEBI	+	builds acid from
[Ref.: #66678]	fusidate ChEBI	-	carbon source
[Ref.: #66678]	galactarate ChEBI	-	carbon source
[Ref.: #66678]	gamma-aminobutyric acid ChEBI	-	carbon source
[Ref.: #66678]	gelatin ChEBI	+	carbon source
[Ref.: #66678]	gelatin ChEBI	+	hydrolysis
[Ref.: #66678]	gentiobiose ChEBI	+	carbon source
[Ref.: #66678]	glucose ChEBI	+	builds acid from
[Ref.: #66678]	glucuronamide ChEBI	-	carbon source
[Ref.: #66678]	glycerol ChEBI	-	carbon source
[Ref.: #66678]	glycine-proline ChEBI	+	carbon source
[Ref.: #66678]	inosine ChEBI	-	carbon source
[Ref.: #66678]	L-alanine ChEBI	-	carbon source
[Ref.: #66678]	L-arginine ChEBI	-	carbon source
[Ref.: #66678]	L-aspartate ChEBI	+	carbon source
[Ref.: #66678]	L-fucose ChEBI	-	carbon source
[Ref.: #66678]	L-galactonic acid gamma-lactone ChEBI	+	carbon source
[Ref.: #66678]	L-glutamate ChEBI	+	carbon source
[Ref.: #66678]	L-histidine ChEBI	-	carbon source
[Ref.: #66678]	L-pyroglutamic acid ChEBI	-	carbon source
[Ref.: #66678]	L-rhamnose ChEBI	+	carbon source
[Ref.: #66678]	L-serine ChEBI	-	carbon source
[Ref.: #66678]	lactose ChEBI	-	carbon source
[Ref.: #66678]	lecithin ChEBI	-	hydrolysis
[Ref.: #66678]	lithium chloride ChEBI	-	carbon source
[Ref.: #66678]	malonate ChEBI	-	assimilation
[Ref.: #66678]	maltose ChEBI	+	builds acid from
[Ref.: #66678]	maltose ChEBI	+	carbon source
[Ref.: #66678]	melibiose ChEBI	-	carbon source
[Ref.: #66678]	methyl (R)-lactate ChEBI	-	carbon source
[Ref.: #66678]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #66678]	methyl pyruvate ChEBI	-	carbon source
[Ref.: #66678]	myo-inositol ChEBI	-	carbon source
[Ref.: #66678]	N-acetyl-D-mannosamine ChEBI	-	carbon source
[Ref.: #66678]	N-acetylgalactosamine ChEBI	+	carbon source
[Ref.: #66678]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #66678]	n-acetylneuraminate ChEBI	-	carbon source
[Ref.: #66678]	nalidixic acid ChEBI	-	carbon source
[Ref.: #66678]	nitrate ChEBI	+	reduction
[Ref.: #66678]	nitrite ChEBI	-	reduction
[Ref.: #66678]	pectin ChEBI	-	carbon source
[Ref.: #66678]	potassium tellurite ChEBI	-	carbon source
[Ref.: #66678]	propionate ChEBI	-	carbon source
[Ref.: #66678]	quinate ChEBI	-	carbon source
[Ref.: #66678]	raffinose ChEBI	-	carbon source
[Ref.: #66678]	salicin ChEBI	+	carbon source
[Ref.: #66678]	sodium bromate ChEBI	-	carbon source
[Ref.: #66678]	sodium butyrate ChEBI	-	carbon source
[Ref.: #66678]	stachyose ChEBI	-	carbon source
[Ref.: #66678]	starch ChEBI	+	hydrolysis
[Ref.: #66678]	sucrose ChEBI	-	carbon source
[Ref.: #66678]	turanose ChEBI	-	carbon source
[Ref.: #66678]	tween 40 ChEBI	+	carbon source
[Ref.: #66678]	tween 80 ChEBI	-	hydrolysis
[Ref.: #66678]	tyrosine ChEBI	-	hydrolysis
[Ref.: #66678]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #66678]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #66678]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #66678]	penicillin g ChEBI				yes	10	µg (disc)
[Ref.: #66678]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #66678]	vibriostat ChEBI	yes	150	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #66678]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #66678]	acid phosphatase	+	3.1.3.2
[Ref.: #66678]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66678]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66678]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66678]	alpha-galactosidase	+	3.2.1.22
[Ref.: #66678]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66678]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66678]	beta-galactosidase	+	3.2.1.23
[Ref.: #66678]	beta-glucosidase	+	3.2.1.21
[Ref.: #66678]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66678]	catalase	+	1.11.1.6
[Ref.: #66678]	cystine arylamidase	-	3.4.11.3
[Ref.: #66678]	esterase (C 4)	+
[Ref.: #66678]	esterase Lipase (C 8)	+
[Ref.: #66678]	leucine arylamidase	+	3.4.11.1
[Ref.: #66678]	lysine decarboxylase	-	4.1.1.18
[Ref.: #66678]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #66678]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66678]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #66678]	trypsin	-	3.4.21.4
[Ref.: #66678]	urease	-	3.5.1.5
[Ref.: #66678]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66678]

Fatty acid	Percentage
C15:0 iso	20.2
C16:1 w7c/ C16:1 w6c	11.6
C17:0 iso 3OH	9.6
C15:0 anteiso	8.2
C15:0 iso 3OH	8.1
C15:1 iso G	7.7
C16:0 iso 3OH	5.3
C16:0 10-methyl/ C17:1 iso w9c	4.5
C17:1 w6c	4
C15:1 w6c	3.6
C15:0 3OH	2.5
C17:0 2OH	2.4
C16:0 iso	2
C16:0 3OH	2
C16:0	1.6
C15:0 2OH	1.1
C16:1 iso H	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66678]	Sample type/isolated from	stone fragment
[Ref.: #66678]	Geographic location (country and/or sea, region)	fissure in Kom arek Wall, James Ross Island
[Ref.: #66678]	Country	Antarctica
[Ref.: #66678]	Country ISO 3 Code	ATA
[Ref.: #66678]	Continent	Australia and Oceania
[Ref.: #66678]	Geographic location	-63.8305°/-57.8388°
[Ref.: #66678]	Enrichment culture	R2A agar
[Ref.: #66678]	Enrichment culture duration	5-7 days
[Ref.: #66678]	Enrichment culture temperature	15 ̊C
[Ref.: #66678]	Isolation/enrichment procedure	1 g stone fragments or soil samples in 5 ml sterile saline solution, subsequently 100 µl of this suspension was spread by L-loop on the surface of Reasoner's 2A agar plates and cultivated at 15°C for up to 5-7 days. Analogously, water samples were spread on R2A agar plates (150 µl) and cultivated at 15°C for up to 5 days.
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66678]	Flavobacterium sp. P3922 16S ribosomal RNA gene, partial sequence	MH100901	1357	ENA	2133767 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium psychroterrae CCM 8827	GCA_018380615	scaffold	GenBank	2133767 tax ID	*
[Ref.: #66792]	Flavobacterium psychroterrae strain CCM 8827	2133767.3	wgs	PATRIC	2133767 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium psychroterrae CCM 8827 NCBI: GCA_018380615.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium psychroterrae CCM 8827 NCBI: GCA_018380615.1
[Ref.: #69480]	flagellated	no	95.207	no
[Ref.: #69480]	gram-positive	no	98.039	no
[Ref.: #69480]	anaerobic	no	99.72	yes
[Ref.: #69480]	aerobic	yes	91.893	no
[Ref.: #69480]	halophile	no	96.333	no
[Ref.: #69480]	spore-forming	no	92.795	yes
[Ref.: #69480]	thermophile	no	99.862	yes
[Ref.: #69480]	glucose-util	yes	89.086	no
[Ref.: #69480]	motile	no	87.341	no
[Ref.: #69480]	glucose-ferment	no	84.013	no

Availability in culture collections External links

[Ref.: #66678]

Culture collection no.

LMG 30616, CCM 8827

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium ranwuense sp. nov., isolated from glacier.	Zhang GQ, Liu Q, Liu HC, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003687	2019	*
Phylogeny	Flavobacterium chryseum sp. nov. and Flavobacterium psychroterrae sp. nov., novel environmental bacteria isolated from Antarctica.	Kralova S, Svec P, Busse HJ, Stankova E, Vaczi P, Sedlacek I	Int J Syst Evol Microbiol	10.1099/ijsem.0.002952	2018	*
Phylogeny	Flavobacterium psychrotolerans sp. nov., a psychrotolerant bacterium isolated from Renlongba glacier on the Tibetan Plateau.	Yang LL, Liu Q, Liu HC, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003868	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66678

Stanislava Kralova, Pavel Svec, Hans-Jürgen Busse, Eva Stankova, Peter Vaczi, Ivo Sedlacek: Flavobacterium chryseum sp. nov. and Flavobacterium psychroterrae sp. nov., novel environmental bacteria isolated from Antarctica. IJSEM 68: 3132 - 3139 2018 ( DOI 10.1099/ijsem.0.002952 , PubMed 30095387 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Flavobacterium psychroterrae CCM 8827

Flavobacterium psychroterrae CCM 8827

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