Flavobacterium chryseum (P3160, LMG 30615, CCM 8826)

Name: Flavobacterium chryseum (P3160, LMG 30615, CCM 8826)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159750

Type strain

Strain Designation P3160

Culture col. no. P3160 LMG 30615 CCM 8826

NCBI tax ID(s) 2301192

Special Collections Literature strains

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Flavobacterium chryseum P3160 is an aerobe, Gram-positive, motile bacterium that has a yellow pigmentation and was isolated from stone fragment.

Gram-positive motile rod-shaped pigmented aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 366588

LMG 30615

@ref 20215

Last LPSN update 2026-05-29 08:44:16

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium chryseum

Full scientific name Flavobacterium chryseum Králová et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
66678	positive	2.2-4.8 µm	0.4-0.8 µm	rod-shaped		gliding

Pigmentation

@ref	Production	Color	Name
66678		yellow	flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
66678	Nutrient agar (NA)
66678	Reasoner's 2A agar (R2A)
66678	tryptic soy agar (TSA)
66678	MacConkey agar
66678	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)
66678	negative	growth	35
66678	positive	growth	1-25

Culture pH

@ref	Ability	Type	PH	PH range
66678	positive	growth	6-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
66678	aerobe
66678	microaerophile

Spore formation

66678

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66678	NaCl	positive	growth	1 %(w/v)
66678	NaCl		growth	2 %(w/v)

Observation

@ref	Observation
66678	Cells occur singly, occasionally in pairs.
66678	Presence of a capsule is negative.
66678	Gliding motility present on R2A agar, but no motility is observed by hanging-drop technique
66678	Growth on Endo agar is strain-dependent.
66678	Glucose is not fermented to acid in OF test medium.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66678	30796 ChEBI	(R)-malic acid	-	carbon source
66678	16651 ChEBI	(S)-lactate	-	carbon source
66678	30797 ChEBI	(S)-malic acid	-	carbon source
66678		1 % sodium lactate	-	carbon source
66678	64552 ChEBI	2-hydroxybutyrate	-	carbon source
66678	16763 ChEBI	2-oxobutanoate	-	carbon source
66678	16810 ChEBI	2-oxoglutarate	-	carbon source
66678	37054 ChEBI	3-hydroxybutyrate	-	carbon source
66678	73918 ChEBI	3-O-methyl-D-glucose	-	carbon source
66678	18101 ChEBI	4-hydroxyphenylacetic acid	-	carbon source
66678	27856 ChEBI	acetamide	-	assimilation
66678	16411 ChEBI	acetic acid	+	carbon source
66678	13705 ChEBI	acetoacetate	-	carbon source
66678	17925 ChEBI	alpha-D-glucose	+	carbon source
66678	161680 ChEBI	aztreonam	-	carbon source
66678	73706 ChEBI	bromosuccinate	-	carbon source
66678		casein	+	hydrolysis
66678	17057 ChEBI	cellobiose	+	carbon source
66678	62968 ChEBI	cellulose	-	degradation
66678	53258 ChEBI	citric acid	-	assimilation
66678	53258 ChEBI	citric acid	-	carbon source
66678	18333 ChEBI	D-arabitol	-	carbon source
66678	29990 ChEBI	D-aspartate	-	carbon source
66678	15824 ChEBI	D-fructose	+	carbon source
66678	78697 ChEBI	D-fructose 6-phosphate	-	carbon source
66678	28847 ChEBI	D-fucose	-	carbon source
66678	12936 ChEBI	D-galactose	+	carbon source
66678	18024 ChEBI	D-galacturonic acid	+	carbon source
66678	30612 ChEBI	D-glucarate	-	carbon source
66678	14314 ChEBI	D-glucose 6-phosphate	-	carbon source
66678	15748 ChEBI	D-glucuronate	-	carbon source
66678	16899 ChEBI	D-mannitol	-	carbon source
66678	16024 ChEBI	D-mannose	+	carbon source
66678	16523 ChEBI	D-serine	-	carbon source
66678	17924 ChEBI	D-sorbitol	-	carbon source
66678	16551 ChEBI	D-trehalose	+	carbon source
66678	23652 ChEBI	dextrin	+	carbon source
66678	16991 ChEBI	dna	+	hydrolysis
66678	4853 ChEBI	esculin	+	hydrolysis
66678	15740 ChEBI	formate	-	carbon source
66678	28757 ChEBI	fructose	+	builds acid from
66678	71321 ChEBI	fusidate	-	carbon source
66678	16537 ChEBI	galactarate	-	carbon source
66678	16865 ChEBI	gamma-aminobutyric acid	-	carbon source
66678	5291 ChEBI	gelatin	+	carbon source
66678	5291 ChEBI	gelatin	+	hydrolysis
66678	28066 ChEBI	gentiobiose	+	carbon source
66678	17234 ChEBI	glucose	+	builds acid from
66678	32323 ChEBI	glucuronamide	-	carbon source
66678	17754 ChEBI	glycerol	-	carbon source
66678	70744 ChEBI	glycine-proline	+	carbon source
66678	17596 ChEBI	inosine	-	carbon source
66678	16977 ChEBI	L-alanine	-	carbon source
66678	16467 ChEBI	L-arginine	-	carbon source
66678	29991 ChEBI	L-aspartate	-	carbon source
66678	18287 ChEBI	L-fucose	-	carbon source
66678	17464 ChEBI	L-galactonic acid gamma-lactone	+	carbon source
66678	29985 ChEBI	L-glutamate	+	carbon source
66678	15971 ChEBI	L-histidine	-	carbon source
66678	18183 ChEBI	L-pyroglutamic acid	-	carbon source
66678	62345 ChEBI	L-rhamnose	-	carbon source
66678	17115 ChEBI	L-serine	-	carbon source
66678	17716 ChEBI	lactose	-	carbon source
66678	61995 ChEBI	lecithin	-	hydrolysis
66678	48607 ChEBI	lithium chloride	-	carbon source
66678	15792 ChEBI	malonate	-	assimilation
66678	17306 ChEBI	maltose	+	builds acid from
66678	17306 ChEBI	maltose	+	carbon source
66678	28053 ChEBI	melibiose	-	carbon source
66678	74611 ChEBI	methyl (R)-lactate	-	carbon source
66678	320055 ChEBI	methyl beta-D-glucopyranoside	+	carbon source
66678	51850 ChEBI	methyl pyruvate	-	carbon source
66678	17268 ChEBI	myo-inositol	-	carbon source
66678	63153 ChEBI	N-acetyl-D-mannosamine	-	carbon source
66678	28800 ChEBI	N-acetylgalactosamine	+	carbon source
66678	59640 ChEBI	N-acetylglucosamine	+	carbon source
66678	35418 ChEBI	n-acetylneuraminate	-	carbon source
66678	100147 ChEBI	nalidixic acid	-	carbon source
66678	17632 ChEBI	nitrate	-	reduction
66678	16301 ChEBI	nitrite	-	reduction
66678	17309 ChEBI	pectin	+	carbon source
66678	75248 ChEBI	potassium tellurite	-	carbon source
66678	17272 ChEBI	propionate	-	carbon source
66678	26490 ChEBI	quinate	-	carbon source
66678	16634 ChEBI	raffinose	+	carbon source
66678	17814 ChEBI	salicin	+	carbon source
66678	75229 ChEBI	sodium bromate	-	carbon source
66678	64103 ChEBI	sodium butyrate	-	carbon source
66678	17164 ChEBI	stachyose	-	carbon source
66678	28017 ChEBI	starch	+	hydrolysis
66678	17992 ChEBI	sucrose	+	carbon source
66678	32528 ChEBI	turanose	-	carbon source
66678	53423 ChEBI	tween 40	+	carbon source
66678	53426 ChEBI	tween 80	-	hydrolysis
66678	18222 ChEBI	xylose	+	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
66678	28971	ampicillin	10 µg (disc)
66678	17698	chloramphenicol	30 µg (disc)
66678	18208	penicillin g	10 µg (disc)
66678	27902	tetracycline	30 µg (disc)
66678	73908	vibriostat	150 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
66678	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
66678	acid phosphatase	+	3.1.3.2
66678	alkaline phosphatase	+	3.1.3.1
66678	alpha-chymotrypsin	-	3.4.21.1
66678	alpha-fucosidase	-	3.2.1.51
66678	alpha-galactosidase	-	3.2.1.22
66678	alpha-mannosidase	-	3.2.1.24
66678	arginine dihydrolase	-	3.5.3.6
66678	beta-glucosidase	+	3.2.1.21
66678	beta-glucuronidase	-	3.2.1.31
66678	catalase	+	1.11.1.6
66678	cystine arylamidase	-	3.4.11.3
66678	cytochrome oxidase	+	1.9.3.1
66678	esterase Lipase (C 8)	+
66678	leucine arylamidase	+	3.4.11.1
66678	lipase (C 14)	-
66678	lysine decarboxylase	-	4.1.1.18
66678	N-acetyl-beta-glucosaminidase	-	3.2.1.52
66678	naphthol-AS-BI-phosphohydrolase	+
66678	ornithine decarboxylase	-	4.1.1.17
66678	trypsin	-	3.4.21.4
66678	urease	-	3.5.1.5
66678	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

66678

Fatty acid	Percentage
C15:0 iso	18.6
C17:0 iso 3OH	10
C16:1 w7c/ C16:1 w6c	9.8
C15:1 iso G	9.5
C15:0 iso 3OH	8.7
C16:0 10-methyl/ C17:1 iso w9c	6.9
C15:1 w6c	6.5
C15:0 anteiso	6.4
C17:1 w6c	4.6
C16:0 iso 3OH	4.5
C16:0 iso	2
C16:0	1.8
C17:0 2OH	1.6
C16:1 iso H	1.5
C15:1 anteiso A	1.2
C15:0 2OH	1.1
C16:0 3OH	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Geologic

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
66678	stone fragment	2009-2014	Devils Rocks, James Ross Island	Antarctica	ATA	Australia and Oceania	-63.8527	-57.8097 -63.8527/-57.8097	R2A agar	5-7 days	15	1 g stone fragments or soil samples in 5 ml sterile saline solution, subsequently 100 µl of this suspension was spread by L-loop on the surface of Reasoner's 2A agar plates and cultivated at 15°C for up to 5-7 days. Analogously, water samples were spread on R2A agar plates (150 µl) and cultivated at 15°C for up to 5 days.

Taxonmaps

69479

Global distribution of 16S sequence MH100900 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	969
Soil Samples	813
Animal Samples	657
Plant Samples	68
Total Samples	2507

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66678	Flavobacterium chryseum strain P3160 16S ribosomal RNA gene, partial sequence	MH100900	1357		2301192
124043	Flavobacterium chryseum strain CCM 8826 16S ribosomal RNA gene, partial sequence.	MT760255	1361		2301192

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ubiquity and Diversity of Cold Adapted Denitrifying Bacteria Isolated From Diverse Antarctic Ecosystems.	Cabezas A, Azziz G, Bovio-Winkler P, Fuentes L, Braga L, Wenzel J, Sabaris S, Tarlera S, Etchebehere C.	Front Microbiol	10.3389/fmicb.2022.827228	2022
Phylogeny	Flavobacterium chryseum sp. nov. and Flavobacterium psychroterrae sp. nov., novel environmental bacteria isolated from Antarctica.	Kralova S, Svec P, Busse HJ, Stankova E, Vaczi P, Sedlacek I	Int J Syst Evol Microbiol	10.1099/ijsem.0.002952	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66678	Stanislava Kralova, Pavel Svec, Hans-Jürgen Busse, Eva Stankova, Peter Vaczi, Ivo Sedlacek: Flavobacterium chryseum sp. nov. and Flavobacterium psychroterrae sp. nov., novel environmental bacteria isolated from Antarctica. IJSEM 68: 3132 - 3139 2018 ( DOI 10.1099/ijsem.0.002952 , PubMed 30095387 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium chryseum (P3160, LMG 30615, CCM 8826)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

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