Name: Ornithinibacillus salinisoli LCB256
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158695

Type strain:

Species: Ornithinibacillus salinisoli

Strain Designation: LCB256

Culture col. no.: CGMCC 1.15809, KCTC 33862

Strain history: <- Longzhan GAN, Sichuan Univ.

NCBI tax ID(s): 1848459 (species)

Section

Ornithinibacillus salinisoli LCB256 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from a saline-alkali soil sample collected at Jade Gate Pass.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Ornithinibacillus*
	Species	**Ornithinibacillus salinisoli**
	Full Scientific Name (LPSN)	Ornithinibacillus salinisoli Gan et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65434]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #65434]	Cell length	3.0-6.0 µm

[Ref.: #65434]	Cell width	0.5-0.7 µm

[Ref.: #65434]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #65434]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #65434]	Flagellum arrangement	peritrichous
[Ref.: #67771]	Flagellum arrangement	peritrichous

[Ref.: #65434]	Colony size	1-2 mm
[Ref.: #65434]	Colony color	greyish pink
[Ref.: #65434]	Colony shape	circular
[Ref.: #65434]	Incubation period	3 days
[Ref.: #65434]	Cultivation medium used	LB agar supplemented with 10 % (w/v) NaCl

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65434]

Culture medium

LB agar supplemented with 10 % (w/v) NaCl

[Ref.: #65434]

Culture medium growth

		Temperature
[Ref.: #65434]	growth	10-52 °C
[Ref.: #65434]	optimum	10-15 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #65434]	Temperature range	psychrophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65434]			optimum	8
[Ref.: #65434]			growth	7-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65434]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #65434]	Spore description	Spherical to ellipsoidal endospores are formed at the terminal position with slightly swollen sporangia
[Ref.: #65434]	Type of spore	endospore
[Ref.: #65434]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65434]		NaCl		growth	3-17	%(w/v)
[Ref.: #65434]		NaCl		optimum	10-15	%(w/v)

[Ref.: #65434]	Observation	cell-wall peptidoglycan contains ornithine as a diamino acid (A4b type)
[Ref.: #65434]	Observation	the major respiratory quinone is MK-7
[Ref.: #65434]	Observation	polar lipids consist of diphosphatidylglycerol, phosphatidylglycerol, one unidentified phospholipid and two unidentified aminolipid
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65434]	3-O-methyl alpha-D-glucopyranoside	+	builds acid from
[Ref.: #65434]	3-O-methyl-D-glucose ChEBI	+	oxidation
[Ref.: #65434]	acetoacetate ChEBI	+	oxidation
[Ref.: #65434]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #65434]	arbutin ChEBI	+	builds acid from
[Ref.: #65434]	casein	+	hydrolysis
[Ref.: #65434]	cellobiose ChEBI	+	builds acid from
[Ref.: #65434]	cellobiose ChEBI	+	carbon source
[Ref.: #65434]	cellobiose ChEBI	+	oxidation
[Ref.: #65434]	citrate ChEBI	+	oxidation
[Ref.: #65434]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65434]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65434]	D-fructose ChEBI	+	builds acid from
[Ref.: #65434]	D-fructose ChEBI	+	carbon source
[Ref.: #65434]	D-fructose ChEBI	+	oxidation
[Ref.: #65434]	D-fructose 6-phosphate ChEBI	+	oxidation
[Ref.: #65434]	D-fucose ChEBI	-	builds acid from
[Ref.: #65434]	D-galactose ChEBI	-	assimilation
[Ref.: #65434]	D-galactose ChEBI	-	builds acid from
[Ref.: #65434]	D-galacturonic acid ChEBI	+	oxidation
[Ref.: #65434]	D-gluconate ChEBI	+	oxidation
[Ref.: #65434]	D-glucose ChEBI	+	builds acid from
[Ref.: #65434]	D-glucose ChEBI	+	carbon source
[Ref.: #65434]	D-glucose 6-phosphate ChEBI	+	oxidation
[Ref.: #65434]	D-glucuronate ChEBI	+	oxidation
[Ref.: #65434]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65434]	D-mannitol ChEBI	+	builds acid from
[Ref.: #65434]	D-mannitol ChEBI	+	carbon source
[Ref.: #65434]	D-mannitol ChEBI	+	oxidation
[Ref.: #65434]	D-mannose ChEBI	+	builds acid from
[Ref.: #65434]	D-mannose ChEBI	+	carbon source
[Ref.: #65434]	D-mannose ChEBI	+	oxidation
[Ref.: #65434]	D-ribose ChEBI	+	builds acid from
[Ref.: #65434]	D-sorbitol ChEBI	-	assimilation
[Ref.: #65434]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #65434]	D-xylose ChEBI	+	carbon source
[Ref.: #65434]	dextrin ChEBI	+	oxidation
[Ref.: #65434]	disodium fumarate ChEBI	-	assimilation
[Ref.: #65434]	erythritol ChEBI	-	builds acid from
[Ref.: #65434]	ethanol ChEBI	-	assimilation
[Ref.: #65434]	galactitol ChEBI	-	assimilation
[Ref.: #65434]	galactitol ChEBI	-	builds acid from
[Ref.: #65434]	gelatin ChEBI	+	hydrolysis
[Ref.: #65434]	gelatin ChEBI	+	oxidation
[Ref.: #65434]	gentiobiose ChEBI	+	oxidation
[Ref.: #65434]	glucuronamide ChEBI	+	oxidation
[Ref.: #65434]	glycerol ChEBI	+	builds acid from
[Ref.: #65434]	glycerol ChEBI	+	carbon source
[Ref.: #65434]	glycerol ChEBI	+	oxidation
[Ref.: #65434]	glycine-proline ChEBI	+	oxidation
[Ref.: #65434]	hydroxyethylcellulose ChEBI	-	assimilation
[Ref.: #65434]	inosine ChEBI	+	oxidation
[Ref.: #65434]	isocitrate ChEBI	-	assimilation
[Ref.: #65434]	L-alanine ChEBI	-	assimilation
[Ref.: #65434]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65434]	L-arabinose ChEBI	+	carbon source
[Ref.: #65434]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65434]	L-arginine ChEBI	+	assimilation
[Ref.: #65434]	L-arginine ChEBI	+	oxidation
[Ref.: #65434]	L-aspartate ChEBI	-	assimilation
[Ref.: #65434]	L-cysteine ChEBI	-	assimilation
[Ref.: #65434]	L-cystine ChEBI	+	assimilation
[Ref.: #65434]	L-fucose ChEBI	-	builds acid from
[Ref.: #65434]	L-galactonic acid gamma-lactone ChEBI	+	oxidation
[Ref.: #65434]	L-glutamate ChEBI	+	assimilation
[Ref.: #65434]	L-lysine ChEBI	-	assimilation
[Ref.: #65434]	L-malate ChEBI	+	oxidation
[Ref.: #65434]	L-methionine ChEBI	-	assimilation
[Ref.: #65434]	L-ornithine ChEBI	+	assimilation
[Ref.: #65434]	L-phenylalanine ChEBI	-	assimilation
[Ref.: #65434]	L-pyroglutamic acid ChEBI	+	oxidation
[Ref.: #65434]	L-rhamnose ChEBI	+	carbon source
[Ref.: #65434]	L-rhamnose ChEBI	+	oxidation
[Ref.: #65434]	L-serine ChEBI	-	assimilation
[Ref.: #65434]	L-sorbose ChEBI	-	assimilation
[Ref.: #65434]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65434]	lactate ChEBI	+	oxidation
[Ref.: #65434]	lactose ChEBI	-	builds acid from
[Ref.: #65434]	lactose ChEBI	+	oxidation
[Ref.: #65434]	maltose ChEBI	-	builds acid from
[Ref.: #65434]	maltose ChEBI	+	carbon source
[Ref.: #65434]	maltose ChEBI	+	oxidation
[Ref.: #65434]	melezitose ChEBI	-	builds acid from
[Ref.: #65434]	melibiose ChEBI	-	builds acid from
[Ref.: #65434]	melibiose ChEBI	+	oxidation
[Ref.: #65434]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65434]	methyl D-glucoside ChEBI	+	oxidation
[Ref.: #65434]	methyl pyruvate ChEBI	-	assimilation
[Ref.: #65434]	myo-inositol ChEBI	+	builds acid from
[Ref.: #65434]	myo-inositol ChEBI	+	carbon source
[Ref.: #65434]	myo-inositol ChEBI	+	oxidation
[Ref.: #65434]	N-acetyl-beta-D-mannosamine ChEBI	-	builds acid from
[Ref.: #65434]	N-acetyl-beta-D-mannosamine ChEBI	+	oxidation
[Ref.: #65434]	N-acetyl-L-glutamate ChEBI	+	oxidation
[Ref.: #65434]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #65434]	N-acetylglucosamine ChEBI	+	oxidation
[Ref.: #65434]	n-acetylneuraminate ChEBI	+	oxidation
[Ref.: #65434]	nitrate ChEBI	+	reduction
[Ref.: #65434]	pectin ChEBI	+	oxidation
[Ref.: #65434]	phenylacetate ChEBI	-	assimilation
[Ref.: #65434]	propionate ChEBI	-	assimilation
[Ref.: #65434]	quinate ChEBI	+	oxidation
[Ref.: #65434]	raffinose ChEBI	+	oxidation
[Ref.: #65434]	ribitol ChEBI	-	builds acid from
[Ref.: #65434]	salicin ChEBI	+	builds acid from
[Ref.: #65434]	salicin ChEBI	+	oxidation
[Ref.: #65434]	stachyose ChEBI	+	oxidation
[Ref.: #65434]	starch ChEBI	-	assimilation
[Ref.: #65434]	starch ChEBI	+	builds acid from
[Ref.: #65434]	sucrose ChEBI	+	builds acid from
[Ref.: #65434]	sucrose ChEBI	+	carbon source
[Ref.: #65434]	sucrose ChEBI	+	oxidation
[Ref.: #65434]	trehalose ChEBI	-	builds acid from
[Ref.: #65434]	trehalose ChEBI	+	carbon source
[Ref.: #65434]	trehalose ChEBI	+	oxidation
[Ref.: #65434]	turanose ChEBI	-	builds acid from
[Ref.: #65434]	turanose ChEBI	+	oxidation
[Ref.: #65434]	tween 20 ChEBI	+	hydrolysis
[Ref.: #65434]	tween 40 ChEBI	+	oxidation
[Ref.: #65434]	tween 60 ChEBI	+	hydrolysis
[Ref.: #65434]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65434]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65434]		sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #65434]	acid phosphatase	-	3.1.3.2
[Ref.: #65434]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65434]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #65434]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65434]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65434]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65434]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #65434]	beta-galactosidase	-	3.2.1.23
[Ref.: #65434]	beta-glucosidase	+	3.2.1.21
[Ref.: #65434]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65434]	catalase	+	1.11.1.6
[Ref.: #65434]	cystine arylamidase	-	3.4.11.3
[Ref.: #65434]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65434]	esterase (C 4)	+
[Ref.: #65434]	esterase Lipase (C 8)	+
[Ref.: #65434]	leucine arylamidase	+	3.4.11.1
[Ref.: #65434]	lipase (C 14)	-
[Ref.: #65434]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65434]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65434]	trypsin	-	3.4.21.4
[Ref.: #65434]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65434]

Fatty acid	Percentage
C15:0 anteiso	46.8
C15:0 iso	21.6
C14:0 iso	9.6
C16:0 iso	6.7
C16:0	5.5
C17:0 anteiso	5
C18:0	1.6
C16:1ω9c	1
C14:0	0.7
C13:0 iso	0.6
C17:0 iso	0.5
C13:0	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65434]	Sample type/isolated from	a saline-alkali soil sample collected at Jade Gate Pass
[Ref.: #65434]	Geographic location (country and/or sea, region)	Gansu Province
[Ref.: #65434]	Country	China
[Ref.: #65434]	Country ISO 3 Code	CHN
[Ref.: #65434]	Continent	Asia
[Ref.: #65434]	Enrichment culture composition	saline agar medium (containing, per litre: 5 g casein peptone, 5 g peptone, 10 g yeast extract, 100 g NaCl, 3 g diumcitrate, 20 g MgSO4 7H2O, 2 g KCl and 20 g agar, pH adjusted to 8.0 with HCl/NaOH)
[Ref.: #65434]	Enrichment culture duration	3 days
[Ref.: #65434]	Enrichment culture temperature	37 ̊C

[Ref.: #67771]	Sample type/isolated from	From saline-alkali soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jade Gate Pass, Gansu Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Alkaline	-
#Condition	#Saline	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65434]	16S rRNA gene sequence	KX008966		GenBank

[Ref.: #65434]	GC-content	39.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67771]	GC-content	39.3 mol%

Availability in culture collections External links

[Ref.: #65434]

Culture collection no.

CGMCC 1.15809, KCTC 33862

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ornithinibacillus salinisoli sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil.	Gan L, Zhang H, Long X, Tian J, Wang Z, Zhang Y, Dai Y, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002580	2018	*
Phylogeny	Description of Ornithinibacillus gellani sp. nov., a halophilic bacterium isolated from lake sediment, and emended description of the genus Ornithinibacillus.	Qu JH, Fu YH, Yue YF, Li HF	Int J Syst Evol Microbiol	10.1099/ijsem.0.003500	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65434

Longzhan Gan, Heming Zhang, Xiufeng Long, Jiewei Tian, Zhikuan Wang, Yuqin Zhang, Yumei Dai, Yongqiang Tian: Ornithinibacillus salinisoli sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil. IJSEM 68: 769 - 775 2018 ( DOI 10.1099/ijsem.0.002580 , PubMed 29458475 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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