Paeniroseomonas fluminis (KACC 19269, JCM 31968, D3)

Name: Paeniroseomonas fluminis (KACC 19269, JCM 31968, D3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158696

Type strain

Strain Designation D3

Culture col. no. KACC 19269 JCM 31968 D3

NCBI tax ID(s) 2078947

Special Collections JCM Literature strains

History JCM <-- T.-Y. Ahn; Dept. of Microbiol., Coll. of Nat. Sci., Dankook Univ., South Korea; D3.

Links

Paeniroseomonas fluminis D3 is an aerobe, Gram-negative, motile bacterium that forms punctiform colonies and was isolated from shallow stream sediments.

Gram-negative motile ovoid-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28246

JCM 31968

@ref 20215

Last LPSN update 2026-05-29 08:44:01

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Paeniroseomonas

Species Paeniroseomonas fluminis

Full scientific name Paeniroseomonas fluminis (Ko et al. 2018) Rai et al. 2022

Synonyms (1)

Roseomonas fluminis

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape	Motility
65435	negative	0.8-1.2 µm	ovoid-shaped

Colony morphology

@ref	Colony color	Colony shape	Medium used
65435	pink	punctiform	nutrient agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
65435	Nutrient agar (NA)
65435	Reasoner's 2A agar
65435	tryptic soy agar
65435	MacConkey agar

Culture temp

@ref	Growth	Type	Temperature (°C)
65435	positive	growth	15-40
65435	positive	optimum	35
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
65435	positive	optimum	7
65435	positive	growth	7-8

Physiology and metabolism

Oxygen tolerance

65435

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65435	NaCl	positive	growth	0-1 %(w/v)
65435	NaCl	positive	optimum	0.5 %(w/v)

Observation

@ref	Observation
65435	major polar lipids of the isolate are diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and unidentified aminolipids, as well as moderate amounts of unidentified lipids
65435	major polyamine is spermidine
65435	major respiratory quinone is ubiquinone-10
67770	quinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65435	17128 ChEBI	adipate	-	fermentation
65435		casein	-	hydrolysis
65435	62968 ChEBI	cellulose	-	hydrolysis
65435	17634 ChEBI	D-glucose	-	assimilation
65435	17634 ChEBI	D-glucose	-	builds acid from
65435	16899 ChEBI	D-mannitol	-	assimilation
65435	16899 ChEBI	D-mannitol	-	builds acid from
65435	16024 ChEBI	D-mannose	-	assimilation
65435	27689 ChEBI	decanoate	-	fermentation
65435	16991 ChEBI	dna	-	hydrolysis
65435	4853 ChEBI	esculin	-	assimilation
65435		esculin ferric citrate	-	hydrolysis
65435	28757 ChEBI	fructose	-	builds acid from
65435	5291 ChEBI	gelatin	-	hydrolysis
65435	16087 ChEBI	isocitrate	-	assimilation
65435	30849 ChEBI	L-arabinose	-	assimilation
65435	30849 ChEBI	L-arabinose	+	builds acid from
65435	16467 ChEBI	L-arginine	-	assimilation
65435	16828 ChEBI	L-tryptophan	-	assimilation
65435	17895 ChEBI	L-tyrosine	+	hydrolysis
65435	17716 ChEBI	lactose	-	builds acid from
65435	25115 ChEBI	malate	+	fermentation
65435	17306 ChEBI	maltose	-	assimilation
65435		maltose hydrate	-	builds acid from
65435	37684 ChEBI	mannose	-	builds acid from
65435	506227 ChEBI	N-acetylglucosamine	-	assimilation
65435	18401 ChEBI	phenylacetate	+	fermentation
65435	32032 ChEBI	potassium gluconate	-	assimilation
65435	16634 ChEBI	raffinose	-	builds acid from
65435	26546 ChEBI	rhamnose	+	builds acid from
65435	17814 ChEBI	salicin	-	builds acid from
65435	53258 ChEBI	sodium citrate	-	assimilation
65435	30911 ChEBI	sorbitol	-	builds acid from
65435	28017 ChEBI	starch	-	hydrolysis
65435	17992 ChEBI	sucrose	-	builds acid from
65435	27082 ChEBI	trehalose	-	builds acid from
65435	53424 ChEBI	tween 20	-	hydrolysis
65435	53423 ChEBI	tween 40	-	hydrolysis
65435	53426 ChEBI	tween 80	-	hydrolysis
65435	16199 ChEBI	urea	+	fermentation
65435	16199 ChEBI	urea	+	hydrolysis
65435	18222 ChEBI	xylose	+	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.
65435	28971	ampicillin	10 µg (disc)
65435	28669	bacitracin	10 µg (disc)
65435	3393	carbenicillin	100 µg (disc)
65435	204928	cefotaxime	30 µg (disc)
65435	17698	chloramphenicol	50 µg (disc)
65435	48923	erythromycin	15 µg (disc)
65435	17833	gentamicin	30 µg (disc)
65435	6104	kanamycin	30 µg (disc)
65435	18208	penicillin g	10 Unit
65435	8309	polymyxin b	300 Unit
65435	28077	rifampicin	5 µg (disc)
65435	17076	streptomycin	10 µg (disc)
65435	27902	tetracycline	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65435	17997 ChEBI	dinitrogen
65435	15138 ChEBI	sulfide

Enzymes

@ref	Value	Activity	Ec
65435	acid phosphatase	+	3.1.3.2
65435	alkaline phosphatase	+	3.1.3.1
65435	alpha-chymotrypsin	-	3.4.21.1
65435	alpha-fucosidase	-	3.2.1.51
65435	alpha-galactosidase	-	3.2.1.22
65435	alpha-glucosidase	-	3.2.1.20
65435	alpha-mannosidase	-	3.2.1.24
65435	beta-galactosidase	-	3.2.1.23
65435	beta-glucosidase	-	3.2.1.21
65435	beta-glucuronidase	-	3.2.1.31
65435	catalase	+	1.11.1.6
65435	cystine arylamidase	-	3.4.11.3
65435	cytochrome oxidase	-	1.9.3.1
65435	esterase (C 4)	+
65435	esterase Lipase (C 8)	-
65435	leucine arylamidase	+	3.4.11.1
65435	lipase (C 14)	-
65435	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65435	naphthol-AS-BI-phosphohydrolase	+
65435	trypsin	-	3.4.21.4
65435	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

65435

Fatty acid	Percentage
C18:1ω7c and/or C18:1ω6c	35.4
C16:1ω7c and/or C16:1ω6c	31.1
C18:0 2OH	14.2
C16:0	8.2
C16:1ω5c	2.3
C18:0	1.8
C18:1ω5c	1.8
C17:1ω9c and/or C16:0 10-methyl	1.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
65435	shallow stream sediments	Sinan-gun	Republic of Korea	KOR	Asia	nutrient agar	5 days	28
67770	Shallow stream sediments in Sinan-gun		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KY649439 (>99% sequence identity) for Roseomonas fluminis subclade from Microbeatlas

Aquatic Samples	580
Soil Samples	1961
Animal Samples	677
Plant Samples	608
Total Samples	3826

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
65435	Paeniroseomonas fluminis strain D3 16S ribosomal RNA gene, partial sequence	KY649439

GC content

@ref	GC-content (mol%)	Method
67770	73.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseomonas fluminis sp. nov. isolated from sediment of a shallow stream.	Ko Y, Yim J, Hwang WM, Kang K, Ahn TY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002578	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65435	Yongseok Ko, Jeeyeo Yim, Woon Mo Hwang, Keunsoo Kang, Tae-Young Ahn: Roseomonas fluminis sp. nov. isolated from sediment of a shallow stream. IJSEM 68: 782 - 787 2018 ( DOI 10.1099/ijsem.0.002578 , PubMed 29458474 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Paeniroseomonas fluminis (KACC 19269, JCM 31968, D3)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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