Name: Roseomonas fluminis D3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158696

Type strain:

Species: Roseomonas fluminis

Strain Designation: D3

Culture col. no.: KACC 19269, JCM 31968

Strain history: T.-Y. Ahn; Dept. of Microbiol., Coll. of Nat. Sci., Dankook Univ., South Korea; D3.

NCBI tax ID(s): 2078947 (species)

Section

Roseomonas fluminis D3 is an aerobe, Gram-negative, motile bacterium that forms punctiform colonies and was isolated from shallow stream sediments.

colony-forming
Gram-negative
motile
ovoid-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Roseomonas*
	Species	**Roseomonas fluminis**
	Full Scientific Name (LPSN)	Roseomonas fluminis Ko et al. 2018

Synonym

Paeniroseomonas fluminis

Information on morphological and physiological properties Morphology

[Ref.: #65435]	Gram stain	negative

[Ref.: #65435]	Cell width	0.8-1.2 µm

[Ref.: #65435]	Cell shape	ovoid-shaped

[Ref.: #65435]	Motility	yes

[Ref.: #65435]	Colony color	pink
[Ref.: #65435]	Colony shape	punctiform
[Ref.: #65435]	Cultivation medium used	nutrient agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar

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Culture medium growth

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Culture medium

tryptic soy agar

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

		Temperature
[Ref.: #65435]	growth	15-40 °C
[Ref.: #65435]	optimum	35 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #65435]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65435]			optimum	7
[Ref.: #65435]			growth	7-8

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65435]		NaCl		growth	0-1	%(w/v)
[Ref.: #65435]		NaCl		optimum	0.5	%(w/v)

[Ref.: #65435]	Observation	major polar lipids of the isolate are diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and unidentified aminolipids, as well as moderate amounts of unidentified lipids
[Ref.: #65435]	Observation	major polyamine is spermidine
[Ref.: #65435]	Observation	major respiratory quinone is ubiquinone-10
[Ref.: #67770]	Observation	quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65435]	adipate ChEBI	-	fermentation
[Ref.: #65435]	casein	-	hydrolysis
[Ref.: #65435]	cellulose ChEBI	-	hydrolysis
[Ref.: #65435]	D-glucose ChEBI	-	assimilation
[Ref.: #65435]	D-glucose ChEBI	-	builds acid from
[Ref.: #65435]	D-mannitol ChEBI	-	assimilation
[Ref.: #65435]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65435]	D-mannose ChEBI	-	assimilation
[Ref.: #65435]	decanoate ChEBI	-	fermentation
[Ref.: #65435]	dna ChEBI	-	hydrolysis
[Ref.: #65435]	esculin ChEBI	-	assimilation
[Ref.: #65435]	esculin ferric citrate	-	hydrolysis
[Ref.: #65435]	fructose ChEBI	-	builds acid from
[Ref.: #65435]	gelatin ChEBI	-	hydrolysis
[Ref.: #65435]	isocitrate ChEBI	-	assimilation
[Ref.: #65435]	L-arabinose ChEBI	-	assimilation
[Ref.: #65435]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65435]	L-arginine ChEBI	-	assimilation
[Ref.: #65435]	L-tryptophan ChEBI	-	assimilation
[Ref.: #65435]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #65435]	lactose ChEBI	-	builds acid from
[Ref.: #65435]	malate ChEBI	+	fermentation
[Ref.: #65435]	maltose ChEBI	-	assimilation
[Ref.: #65435]	maltose hydrate	-	builds acid from
[Ref.: #65435]	mannose ChEBI	-	builds acid from
[Ref.: #65435]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65435]	phenylacetate ChEBI	+	fermentation
[Ref.: #65435]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65435]	raffinose ChEBI	-	builds acid from
[Ref.: #65435]	rhamnose ChEBI	+	builds acid from
[Ref.: #65435]	salicin ChEBI	-	builds acid from
[Ref.: #65435]	sodium citrate ChEBI	-	assimilation
[Ref.: #65435]	sorbitol ChEBI	-	builds acid from
[Ref.: #65435]	starch ChEBI	-	hydrolysis
[Ref.: #65435]	sucrose ChEBI	-	builds acid from
[Ref.: #65435]	trehalose ChEBI	-	builds acid from
[Ref.: #65435]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65435]	tween 40 ChEBI	-	hydrolysis
[Ref.: #65435]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65435]	urea ChEBI	+	fermentation
[Ref.: #65435]	urea ChEBI	+	hydrolysis
[Ref.: #65435]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic resistance	Concentration
[Ref.: #65435]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65435]	bacitracin ChEBI	yes	10	µg (disc)
[Ref.: #65435]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #65435]	cefotaxime ChEBI	yes	30	µg (disc)
[Ref.: #65435]	chloramphenicol ChEBI	yes	50	µg (disc)
[Ref.: #65435]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #65435]	gentamicin ChEBI	yes	30	µg (disc)
[Ref.: #65435]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #65435]	penicillin g ChEBI	yes	10	Unit
[Ref.: #65435]	polymyxin b ChEBI	yes	300	Unit
[Ref.: #65435]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #65435]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #65435]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65435]		dinitrogen ChEBI	no
[Ref.: #65435]		sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65435]	acid phosphatase	+	3.1.3.2
[Ref.: #65435]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65435]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65435]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65435]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65435]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65435]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65435]	beta-galactosidase	-	3.2.1.23
[Ref.: #65435]	beta-glucosidase	-	3.2.1.21
[Ref.: #65435]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65435]	catalase	+	1.11.1.6
[Ref.: #65435]	cystine arylamidase	-	3.4.11.3
[Ref.: #65435]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65435]	esterase (C 4)	+
[Ref.: #65435]	esterase Lipase (C 8)	-
[Ref.: #65435]	leucine arylamidase	+	3.4.11.1
[Ref.: #65435]	lipase (C 14)	-
[Ref.: #65435]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65435]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65435]	trypsin	-	3.4.21.4
[Ref.: #65435]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C18:1ω7c and/or C18:1ω6c	35.4
C16:1ω7c and/or C16:1ω6c	31.1
C18:0 2OH	14.2
C16:0	8.2
C16:1ω5c	2.3
C18:0	1.8
C18:1ω5c	1.8
C17:1ω9c and/or C16:0 10-methyl	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65435]	Sample type/isolated from	shallow stream sediments
[Ref.: #65435]	Geographic location (country and/or sea, region)	Sinan-gun
[Ref.: #65435]	Country	Republic of Korea
[Ref.: #65435]	Country ISO 3 Code	KOR
[Ref.: #65435]	Continent	Asia
[Ref.: #65435]	Enrichment culture composition	nutrient agar
[Ref.: #65435]	Enrichment culture duration	5 days
[Ref.: #65435]	Enrichment culture temperature	28 ̊C

[Ref.: #67770]	Sample type/isolated from	Shallow stream sediments in Sinan-gun
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

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Global distribution of 16S sequence KY649439 (>99% sequence identity) for Roseomonas fluminis subclade from Microbeatlas

Aquatic Samples	580
Soil Samples	1961
Animal Samples	677
Plant Samples	608
Total Samples	3826

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65435]	16S rRNA gene sequence	KY649439		GenBank

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GC-content

73.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

KACC 19269, JCM 31968

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseomonas fluminis sp. nov. isolated from sediment of a shallow stream.	Ko Y, Yim J, Hwang WM, Kang K, Ahn TY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002578	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65435

Yongseok Ko, Jeeyeo Yim, Woon Mo Hwang, Keunsoo Kang, Tae-Young Ahn: Roseomonas fluminis sp. nov. isolated from sediment of a shallow stream. IJSEM 68: 782 - 787 2018 ( DOI 10.1099/ijsem.0.002578 , PubMed 29458474 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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