Name: Haloterrigena salina XH-65
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5887

Type strain:

Species: Haloterrigena salina

Strain Designation: XH-65

Culture col. no.: DSM 18196, CGMCC 1.6203, JCM 13891

Strain history: A. Ventosa XH-65.

NCBI tax ID(s): 1227488 (strain), 504937 (species)

SI-ID 312514

CGMCC 1.6203, JCM 13891, CECT 7146, DSM 18196

Section

Haloterrigena salina XH-65 is an aerobe, mesophilic, Gram-negative archaeon that was isolated from saline Lake Xilinhot.

coccus-shaped
Gram-negative
aerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Natrialbales*
	Family	*Natrialbaceae*
	Genus	*Haloterrigena*
	Species	**Haloterrigena salina**
	Full Scientific Name (LPSN)	Haloterrigena salina Gutiérrez et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #31207]	Gram stain	negative

[Ref.: #31207]	Cell width	1.2-1.6 µm

[Ref.: #31207]	Cell shape	coccus-shaped

[Ref.: #31207]	Motility	no

[Ref.: #31207]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7420]

Culture medium

MEDIUM FOR HALOPHILIC ARCHAEA (DSMZ Medium 1184)

[Ref.: #7420]

Culture medium growth

[Ref.: #7420]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7420]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7420]	growth	37 °C
[Ref.: #31207]	growth	25-50 °C
[Ref.: #31207]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #7420]	Temperature range	mesophilic
[Ref.: #31207]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31207]			optimum	07-08
[Ref.: #31207]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31207]

Oxygen tolerance

aerobe

[Ref.: #31207]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31207]		NaCl		growth	14.5-29	%
[Ref.: #31207]		NaCl		optimum	19.72	%

[Ref.: #31207]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31207]	acetate ChEBI	+	carbon source
[Ref.: #31207]	arabinose ChEBI	+	carbon source
[Ref.: #31207]	aspartate ChEBI	+	carbon source
[Ref.: #31207]	esculin ChEBI	+	hydrolysis
[Ref.: #31207]	fructose ChEBI	+	carbon source
[Ref.: #31207]	galactose ChEBI	+	carbon source
[Ref.: #31207]	glucose ChEBI	+	carbon source
[Ref.: #31207]	glutamate ChEBI	+	carbon source
[Ref.: #31207]	glycerol ChEBI	+	carbon source
[Ref.: #31207]	lactose ChEBI	+	carbon source
[Ref.: #31207]	maltose ChEBI	+	carbon source
[Ref.: #31207]	mannose ChEBI	+	carbon source
[Ref.: #31207]	nitrate ChEBI	+	reduction
[Ref.: #31207]	threonine ChEBI	+	carbon source
[Ref.: #31207]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31207]		catalase	+	1.11.1.6
[Ref.: #31207]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7420]	Sample type/isolated from	saline Lake Xilinhot
[Ref.: #7420]	Geographic location (country and/or sea, region)	Inner Mongolia (43° 55' N 115° 37' E)
[Ref.: #7420]	Country	China
[Ref.: #7420]	Country ISO 3 Code	CHN
[Ref.: #7420]	Continent	Asia
[Ref.: #7420]	Geographic location	43.9167°/115.6170°

[Ref.: #67770]	Sample type/isolated from	Salt lake Xilinhot in Inner Mongolia
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB663448 (>99% sequence identity) for Haloterrigena salina from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples
Plant Samples
Total Samples	1

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7420]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7420]	Haloterrigena salina 16S rRNA gene, type strain XH-65T	AM942763	1421	ENA	504937 tax ID
[Ref.: #20218]	Haloterrigena salina gene for 16S rRNA, complete sequence, strain: JCM 13891	AB663448	1475	ENA	504937 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloterrigena salina JCM 13891	GCA_000337495	contig	GenBank	1227488 tax ID
[Ref.: #66792]	Haloterrigena salina JCM 13891	2554235505	draft	JGI IMG/M	1227488 tax ID	*
[Ref.: #66792]	Haloterrigena salina JCM 13891	1227488.3	wgs	PATRIC	1227488 tax ID	*

[Ref.: #7420]	GC-content	67.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #31207]	GC-content	67 mol%
[Ref.: #67770]	GC-content	67 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #7420]

Culture collection no.

DSM 18196, CGMCC 1.6203, JCM 13891

[Ref.: #75367]

SI-ID 312514

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloterrigena salifodinae sp. nov., an extremely halophilic archaeon isolated from a subterranean rock salt.	Chen S, Xu Y, Sun S, Chen F	Antonie Van Leeuwenhoek	10.1007/s10482-019-01264-w	2019	*
Phylogeny	Haloterrigena daqingensis sp. nov., an extremely haloalkaliphilic archaeon isolated from a saline-alkaline soil.	Wang S, Yang Q, Liu ZH, Sun L, Wei D, Zhang JZ, Song JZ, Yuan HF	Int J Syst Evol Microbiol	10.1099/ijs.0.013995-0	2009	*
Phylogeny	Haloterrigena salina sp. nov., an extremely halophilic archaeon isolated from a salt lake.	Gutierrez MC, Castillo AM, Kamekura M, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/001602-0	2008	*

References

#7420

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18196

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31207

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27534 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75367

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID312514.1 )

#27534

IJSEM 2880 2008 ( DOI 10.1099/ijs.0.2008/001602-0 , PubMed 19060076 )

* These data were automatically processed and therefore are not curated

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