Strain identifier

BacDive ID: 5887

Type strain: Yes

Species: Haloterrigena salina

Strain Designation: XH-65

Strain history: A. Ventosa XH-65.

NCBI tax ID(s): 1227488 (strain), 504937 (species)

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General

@ref: 7420

BacDive-ID: 5887

DSM-Number: 18196

keywords: genome sequence, 16S sequence, Archaea, aerobe, mesophilic, Gram-negative, coccus-shaped

description: Haloterrigena salina XH-65 is an aerobe, mesophilic, Gram-negative archaeon that was isolated from saline Lake Xilinhot.

NCBI tax id

NCBI tax idMatching level
1227488strain
504937species

strain history

@refhistory
7420<- A. Ventosa, Univ. Seville, Dept. Microbiol. Parasitol., Spain; XH-65 <- A. M. Castillo et al.
67770A. Ventosa XH-65.

doi: 10.13145/bacdive5887.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Natrialbales
  • family: Natrialbaceae
  • genus: Haloterrigena
  • species: Haloterrigena salina
  • full scientific name: Haloterrigena salina Gutiérrez et al. 2008

@ref: 7420

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Natrialbaceae

genus: Haloterrigena

species: Haloterrigena salina

full scientific name: Haloterrigena salina Gutiérrez et al. 2008

strain designation: XH-65

type strain: yes

Morphology

cell morphology

  • @ref: 31207
  • gram stain: negative
  • cell width: 1.2-1.6 µm
  • cell shape: coccus-shaped
  • motility: no

pigmentation

  • @ref: 31207
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 7420
  • name: MEDIUM FOR HALOPHILIC ARCHAEA (DSMZ Medium 1184)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1184
  • composition: Name: MEDIUM FOR HALOPHILIC ARCHAEA (DSMZ Medium 1184) Composition: NaCl 195.0 g/l MgSO4 x 7 H2O 50.8 g/l MgCl2 x 6 H2O 32.5 g/l Agar 20.0 g/l KCl 5.0 g/l Yeast extract 5.0 g/l CaCl2 x 2 H2O 0.8 g/l NaBr 0.6 g/l NaHCO3 0.16 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7420positivegrowth37mesophilic
31207positivegrowth25-50
31207positiveoptimum37mesophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
31207positivegrowth06-09alkaliphile
31207positiveoptimum07-08

Physiology and metabolism

oxygen tolerance

  • @ref: 31207
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31207
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31207NaClpositivegrowth14.5-29 %
31207NaClpositiveoptimum19.72 %

observation

  • @ref: 31207
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3120730089acetate+carbon source
3120722599arabinose+carbon source
3120735391aspartate+carbon source
3120728757fructose+carbon source
3120728260galactose+carbon source
3120717234glucose+carbon source
3120729987glutamate+carbon source
3120717754glycerol+carbon source
3120717716lactose+carbon source
3120717306maltose+carbon source
3120737684mannose+carbon source
3120726986threonine+carbon source
3120718222xylose+carbon source
312074853esculin+hydrolysis
3120717632nitrate+reduction

enzymes

@refvalueactivityec
31207catalase+1.11.1.6
31207cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
7420saline Lake XilinhotInner Mongolia (43° 55' N 115° 37' E)ChinaCHNAsia43.9167115.617
67770Salt lake Xilinhot in Inner MongoliaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_187324.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17652;96_68845;97_89497;98_121777;99_187324&stattab=map
  • Last taxonomy: Haloterrigena salina
  • 16S sequence: AB663448
  • Sequence Identity:
  • Total samples: 1
  • aquatic counts: 1

Safety information

risk assessment

  • @ref: 7420
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Haloterrigena salina gene for 16S rRNA, complete sequence, strain: JCM 13891AB6634481475ena504937
7420Haloterrigena salina 16S rRNA gene, type strain XH-65TAM9427631421ena504937

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haloterrigena salina JCM 138912554235505draftimg1227488
67770Haloterrigena salina JCM 13891GCA_000337495contigncbi1227488
66792Haloterrigena salina JCM 138911227488.3wgspatric1227488

GC content

@refGC-contentmethod
742067.0thermal denaturation, midpoint method (Tm)
3120767
6777067thermal denaturation, midpoint method (Tm)

External links

@ref: 7420

culture collection no.: DSM 18196, CGMCC 1.6203, JCM 13891

straininfo link

  • @ref: 75367
  • straininfo: 312514

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19060076Haloterrigena salina sp. nov., an extremely halophilic archaeon isolated from a salt lake.Gutierrez MC, Castillo AM, Kamekura M, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.2008/001602-02008Fatty Acids/analysis, Halobacteriaceae/chemistry/*classification/genetics/*physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Salts, Species Specificity, *Water MicrobiologyGenetics
Phylogeny19915113Haloterrigena daqingensis sp. nov., an extremely haloalkaliphilic archaeon isolated from a saline-alkaline soil.Wang S, Yang Q, Liu ZH, Sun L, Wei D, Zhang JZ, Song JZ, Yuan HFInt J Syst Evol Microbiol10.1099/ijs.0.013995-02009Base Composition, Carbohydrate Metabolism, China, Cluster Analysis, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Halobacteriaceae/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Pigments, Biological/biosynthesis, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, *Soil Microbiology, TemperatureMetabolism
Phylogeny31006074Haloterrigena salifodinae sp. nov., an extremely halophilic archaeon isolated from a subterranean rock salt.Chen S, Xu Y, Sun S, Chen FAntonie Van Leeuwenhoek10.1007/s10482-019-01264-w2019Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Halobacteriaceae/*classification/genetics/*isolation & purification/physiology, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
7420Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18196)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18196
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
31207Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604127534
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75367Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID312514.1StrainInfo: A central database for resolving microbial strain identifiers