Name: Stutzerimonas zhaodongensis NEAU-ST5-21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130579

Type strain:

Species: Stutzerimonas zhaodongensis

Strain Designation: NEAU-ST5-21

Culture col. no.: DSM 27559, ACCC 06362

Strain history: <- J. Juquan, Northeast Agricultural Univ., Harbin, China; NEAU-ST5-21 <- Y. Pan

NCBI tax ID(s): 1176257 (species)

SI-ID 400221

DSM 27559

Section

Stutzerimonas zhaodongensis NEAU-ST5-21 is a mesophilic bacterium that was isolated from saline-alkaline soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	Stutzerimonas
	Species	Stutzerimonas zhaodongensis
	Full Scientific Name (LPSN)	Stutzerimonas zhaodongensis (Zhang et al. 2015) Gomila et al. 2022

Synonym

Pseudomonas zhaodongensis

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #22029]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22029]

Culture medium

HIGH MAGNESIUM MEDIUM (DSMZ Medium 1506)

[Ref.: #22029]

Culture medium growth

[Ref.: #22029]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22029]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22029]			growth	28 °C

[Ref.: #22029]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22029]	24996	+	-	-	+	-	+	-	-	+	+	-	+	-	+	+	+	-	+	+	-	+
[Ref.: #22029]	23107	+	-	+	+	-	-	-	-	+	+	-	+	-	+	+	+	-	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22029]	Sample type/isolated from	saline-alkaline soil
[Ref.: #22029]	Geographic location (country and/or sea, region)	Heilongjiang Province, Songnen Plain, Zhaodong City (46° 03' 56.62'' N 125° 54' 12.48'' E)
[Ref.: #22029]	Country	China
[Ref.: #22029]	Country ISO 3 Code	CHN
[Ref.: #22029]	Continent	Asia
[Ref.: #22029]	Geographic location	46.0657°/125.9030°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Alkaline	-
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ762275 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	64
Soil Samples	62
Animal Samples	92
Plant Samples	25
Total Samples	243

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22029]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22029]	Pseudomonas zhaodongensis strain NEAU-ST5-21 16S ribosomal RNA gene, partial sequence	JQ762275	1403	ENA	1176257 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	[Pseudomonas] zhaodongensis NEAU-ST5-21	GCA_003696365	contig	GenBank	1176257 tax ID	*

[Ref.: #22029]

GC-content

65 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas zhaodongensis NEAU-ST5-21 NCBI: GCA_003696365.1
[Ref.: #69480]	flagellated	yes	85.872	no
[Ref.: #69480]	gram-positive	no	98.923	no
[Ref.: #69480]	anaerobic	no	97.29	no
[Ref.: #69480]	aerobic	yes	92.155	no
[Ref.: #69480]	halophile	no	84.043	no
[Ref.: #69480]	spore-forming	no	94.918	no
[Ref.: #69480]	glucose-util	yes	93.244	yes
[Ref.: #69480]	thermophile	no	99.827	yes
[Ref.: #69480]	motile	yes	91.6	no
[Ref.: #69480]	glucose-ferment	no	91.88	no

Availability in culture collections External links

[Ref.: #22029]

Culture collection no.

DSM 27559, ACCC 06362

[Ref.: #89096]

SI-ID 400221

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas lopnurensis sp. nov., an endophytic bacterium isolated from Populus euphratica at the ancient Ugan river.	Mamtimin T, Anwar N, Abdurahman M, Kurban M, Rozahon M, Mamtimin H, Hamood B, Rahman E, Wu M	Antonie Van Leeuwenhoek	10.1007/s10482-021-01524-8	2021	*
Phylogeny	Pseudomonas zhaodongensis sp. nov., isolated from saline and alkaline soils.	Zhang L, Pan Y, Wang K, Zhang X, Zhang C, Zhang S, Fu X, Jiang J	Int J Syst Evol Microbiol	10.1099/ijs.0.000057	2015	*
Metabolism	The identification and performance assessment of dominant bacterial species during linear alkylbenzene sulfonate (LAS)-biodegradation in a bioelectrochemical system.	Askari A, Vahabzadeh F, Mardanpour MM	Bioprocess Biosyst Eng	10.1007/s00449-021-02629-0	2021	*
Phylogeny	Pseudomonas marianensis sp. nov., a marine bacterium isolated from deep-sea sediments of the Mariana Trench.	Yang Y, Gao Y, Liu Y, Liu B, Wang D, Xu Y, Wei Y	Arch Microbiol	10.1007/s00203-022-03250-9	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22029

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27559

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89096

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400221.1 )

* These data were automatically processed and therefore are not curated

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Pseudomonas zhaodongensis NEAU-ST5-21

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