Name: Weissella diestrammenae ORY33
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24151

Type strain:

Species: Weissella diestrammenae

Strain Designation: ORY33

Culture col. no.: DSM 27940, JCM 18559, KACC 16890

Strain history: J.-W. Bae ORY33.

NCBI tax ID(s): 1162633 (species)

SI-ID 400829

DSM 27940

Section

Weissella diestrammenae ORY33 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from gut of a camel cricket .

coccus-shaped
Gram-positive
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Weissella*
	Species	**Weissella diestrammenae**
	Full Scientific Name (LPSN)	Weissella diestrammenae Oh et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30921]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30921]	Cell length	1.1 µm

[Ref.: #30921]	Cell width	0.6 µm

[Ref.: #30921]	Cell shape	coccus-shaped

[Ref.: #30921]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %96.532

[Ref.: #30921]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21074]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #21074]

Culture medium growth

[Ref.: #21074]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21074]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21074]	growth	30 °C
[Ref.: #30921]	growth	04-37 °C
[Ref.: #30921]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #21074]	Temperature range	mesophilic
[Ref.: #30921]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30921]			optimum	7
[Ref.: #30921]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21074]	Oxygen tolerance	microaerophile
[Ref.: #30921]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30921]		NaCl		growth	0-4	%

[Ref.: #30921]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30921]	dextrin ChEBI	+	carbon source
[Ref.: #30921]	fructose ChEBI	+	carbon source
[Ref.: #30921]	gluconate ChEBI	+	carbon source
[Ref.: #30921]	glucose ChEBI	+	carbon source
[Ref.: #30921]	inosine ChEBI	+	carbon source
[Ref.: #30921]	lactate ChEBI	+	carbon source
[Ref.: #30921]	maltose ChEBI	+	carbon source
[Ref.: #30921]	mannose ChEBI	+	carbon source
[Ref.: #30921]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30921]	ribose ChEBI	+	carbon source
[Ref.: #30921]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30921]		acid phosphatase	+	3.1.3.2
[Ref.: #30921]		alkaline phosphatase	+	3.1.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21074]	Sample type/isolated from	gut of a camel cricket (Diestrammena coreana )
[Ref.: #21074]	Host species	Diestrammena coreana
[Ref.: #21074]	Country	Republic of Korea
[Ref.: #21074]	Country ISO 3 Code	KOR
[Ref.: #21074]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Gut of a camel cricket (Diestrammena coreana)
[Ref.: #67770]	Host species	Diestrammena coreana
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	#Stomach

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC521990 (>99% sequence identity) for Weissella diestrammenae subclade from Microbeatlas

Aquatic Samples	26
Soil Samples	13
Animal Samples	458
Plant Samples	56
Total Samples	553

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21074]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Weissella diestrammenae JCM 18559 gene for 16S rRNA, partial sequence	LC521990	1515	ENA	1162633 tax ID
[Ref.: #21074]	Weissella diestrammenae strain ORY33 16S ribosomal RNA gene, partial sequence	JQ646523	1451	ENA	1162633 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Weissella diestrammenae KACC 16890	GCA_014397255	complete	GenBank	1162633 tax ID	*
[Ref.: #66792]	Weissella diestrammenae strain DSM 27940	1162633.4	wgs	PATRIC	1162633 tax ID	*
[Ref.: #66792]	Weissella diestrammenae strain KACC 16890	1162633.3	complete	PATRIC	1162633 tax ID	*
[Ref.: #66792]	Weissella diestrammenae DSM 27940	2901190185	draft	JGI IMG/M	1162633 tax ID	*
[Ref.: #66792]	Weissella diestrammenae KACC 16890	2896402965	complete	JGI IMG/M	1162633 tax ID	*

[Ref.: #21074]	GC-content	45.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30921]	GC-content	45 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Weissella diestrammenae KACC 16890 NCBI: GCA_014397255.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Weissella diestrammenae KACC 16890 NCBI: GCA_014397255.1
[Ref.: #69480]	flagellated	no	98.344	yes
[Ref.: #69480]	gram-positive	yes	95.004	no
[Ref.: #69480]	anaerobic	no	92.336	yes
[Ref.: #69480]	aerobic	no	97.848	yes
[Ref.: #69480]	halophile	yes	94.248	no
[Ref.: #69480]	spore-forming	no	96.286	no
[Ref.: #69480]	thermophile	no	99.381	yes
[Ref.: #69480]	glucose-util	yes	90.777	yes
[Ref.: #69480]	motile	no	95.756	yes
[Ref.: #69480]	glucose-ferment	yes	85.989	no

Availability in culture collections External links

[Ref.: #21074]

Culture collection no.

DSM 27940, JCM 18559, KACC 16890

[Ref.: #88109]

SI-ID 400829

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Weissella diestrammenae sp. nov., isolated from the gut of a camel cricket (Diestrammena coreana).	Oh SJ, Shin NR, Hyun DW, Kim PS, Kim JY, Kim MS, Yun JH, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.047548-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21074

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27940

#30921

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27251 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88109

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400829.1 )

#27251

IJSEM 2951 2013 ( DOI 10.1099/ijs.0.047548-0 , PubMed 23396715 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Weissella diestrammenae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Weissella diestrammenae KACC 16890

Weissella diestrammenae KACC 16890

Change proposal

Change proposal